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L1_008_000M1_scaffold_204

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_204_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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393..770
DNA (378bp) protein (126aa)
GntR family Bacterial regulatory protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YU77_9FIRM
GntR family Bacterial regulatory protein {ECO:0000313|EMBL:CDD34964.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
GntR family transcriptional regulator
L1_008_000M1_scaffold_204_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

789..1673
DNA (885bp) protein (295aa)
sugar ABC transporter ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YM90_9FIRM
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:CDD34965.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_204_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1670..2791
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z229_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34966.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_204_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2808..3836
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34967.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_204_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3908..5806
DNA (1899bp) protein (633aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG32_9FIRM
fructose-1,6-bisphosphatase III
L1_008_000M1_scaffold_204_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5838..7013
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YU83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34969.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L1_008_000M1_scaffold_204_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6997..9324
DNA (2328bp) protein (776aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YM97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34970.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ABC transporter-like protein
L1_008_000M1_scaffold_204_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9341..9880
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z233_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34971.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_204_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9895..12075
DNA (2181bp) protein (727aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34972.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ABC transporter-like protein
L1_008_000M1_scaffold_204_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12088..13557
DNA (1470bp) protein (490aa)
Polysaccharide biosynthesis protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG40_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDD34973.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
polysaccharide biosynthesis protein
L1_008_000M1_scaffold_204_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13554..14366
DNA (813bp) protein (271aa)
LicD1 protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YU90_9FIRM
LicD1 protein {ECO:0000313|EMBL:CDD34974.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
LICD protein family superfamily protein
L1_008_000M1_scaffold_204_12
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14387..17041
DNA (2655bp) protein (885aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UI59_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21312.1}; Flags: Precursor;; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L1_008_000M1_scaffold_204_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17099..18007)
DNA (909bp) protein (303aa)
Uncharacterized conserved protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMA3_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD34975.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_204_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18031..19869)
DNA (1839bp) protein (613aa)
GTP-binding protein TypA/BipA n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z238_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:CDD34976.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
GTP-binding protein TypA
L1_008_000M1_scaffold_204_15
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20103..20807
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74961.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
single-stranded DNA-binding protein
L1_008_000M1_scaffold_204_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20917..21399
DNA (483bp) protein (161aa)
ATP:corrinoid adenosyltransferase (EC:2.5.1.17)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34978.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_204_17
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21769..24984
DNA (3216bp) protein (1072aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large subunit n=1 Tax=Clostridium sp. CAG:127 RepID=R5NPW5_9CLOT
L1_008_000M1_scaffold_204_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25434..26324
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWV2_9FIRM
L1_008_000M1_scaffold_204_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26349..27104
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG49_9FIRM
L1_008_000M1_scaffold_204_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27131..28537
DNA (1407bp) protein (469aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUA1_9FIRM
L1_008_000M1_scaffold_204_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28537..30765
DNA (2229bp) protein (743aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMB5_9FIRM
L1_008_000M1_scaffold_204_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30781..31263
DNA (483bp) protein (161aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Peptide deformylase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z247_9FIRM
hypothetical protein
L1_008_000M1_scaffold_204_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31264..32205
DNA (942bp) protein (314aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWV9_9FIRM
L1_008_000M1_scaffold_204_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32218..33561
DNA (1344bp) protein (448aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG55_9FIRM
sun protein
L1_008_000M1_scaffold_204_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33562..34608
DNA (1047bp) protein (349aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUA8_9FIRM
L1_008_000M1_scaffold_204_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34621..35343
DNA (723bp) protein (241aa)
Protein serine/threonine phosphatase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMC1_9FIRM
Protein serine/threonine phosphatase {ECO:0000313|EMBL:CDD34990.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ser/Thr phosphatase
L1_008_000M1_scaffold_204_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35366..37417
DNA (2052bp) protein (684aa)
Serine/threonine protein kinase with PASTA sensor(S) n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z254_9FIRM
Serine/threonine protein kinase with PASTA sensor(S) {ECO:0000313|EMBL:CDD34991.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
serine/threonine protein kinase with PASTA sensor(s)
L1_008_000M1_scaffold_204_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37417..38319
DNA (903bp) protein (301aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWW4_9FIRM
L1_008_000M1_scaffold_204_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38338..39009
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG60_9FIRM
L1_008_000M1_scaffold_204_30
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39217..40161
DNA (945bp) protein (315aa)
Cysteine-rich small domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUB3_9FIRM
Cysteine-rich small domain protein {ECO:0000313|EMBL:CDD34994.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Uncharacterized protein containing a Zn-finger-like domain
Displaying items 1-30 of 68 in total

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