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L1_008_000M1_scaffold_227

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_227_1
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(69..206)
DNA (138bp) protein (46aa)
cro regulatory protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B3C339
Putative transcriptional regulator {ECO:0000313|EMBL:ETP73666.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
HTH domain-containing protein
L1_008_000M1_scaffold_227_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(303..530)
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L0V7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13247.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_227_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(545..4108)
DNA (3564bp) protein (1188aa)
Topoisomerase-like C4 zinc finger-containing protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAJ3_9CLOT
Topoisomerase-like C4 zinc finger-containing protein {ECO:0000313|EMBL:CDD75204.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
topoisomerase-like C4 zinc finger-containing protein
L1_008_000M1_scaffold_227_4
unknown

Not on your lists

comp(4221..4373)
DNA (153bp) protein (51aa)

This feature has no annotations

L1_008_000M1_scaffold_227_5
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4636..4869)
DNA (234bp) protein (78aa)
TIGR02687 family protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAR7_9CLOT
TIGR02687 family protein {ECO:0000313|EMBL:CDD75196.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L1_008_000M1_scaffold_227_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4937..5299)
DNA (363bp) protein (121aa)
TIGR02687 family protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAR7_9CLOT
TIGR02687 family protein {ECO:0000313|EMBL:CDD75196.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L1_008_000M1_scaffold_227_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5300..5644)
DNA (345bp) protein (115aa)
TIGR02687 family protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAR7_9CLOT
TIGR02687 family protein {ECO:0000313|EMBL:CDD75196.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L1_008_000M1_scaffold_227_8
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5646..6218)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5SCG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42772.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Conserved hypothetical protein CHP02646
L1_008_000M1_scaffold_227_9
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6215..7474)
DNA (1260bp) protein (420aa)
Predicted ATP-binding protein involved in virulence n=1 Tax=Clostridium sp. CAG:122 RepID=R5RQ42_9CLOT
Predicted ATP-binding protein involved in virulence {ECO:0000313|EMBL:CCZ42773.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Predicted ATP-binding protein involved in virulence
L1_008_000M1_scaffold_227_10
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7782..8588)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6LUP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB91128.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
hypothetical protein
L1_008_000M1_scaffold_227_11
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8668..9336)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) RepID=A7GE94_CLOBL
Uncharacterized protein {ECO:0000313|EMBL:KGK85871.1}; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
hypothetical protein
L1_008_000M1_scaffold_227_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9456..9665)
DNA (210bp) protein (70aa)
Eco57I restriction endonuclease n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAR2_9CLOT
Eco57I restriction endonuclease {ECO:0000313|EMBL:CDD75191.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
N-6 DNA Methylase
L1_008_000M1_scaffold_227_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9993..10430)
DNA (438bp) protein (146aa)
Uncharacterized conserved protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSZ0_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD34509.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_227_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10444..10980)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YKZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34510.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_227_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10971..11672)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z0X0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34511.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L1_008_000M1_scaffold_227_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11665..12516)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34512.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_227_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12735..13151)
DNA (417bp) protein (139aa)
Zn-finger containing protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C710_9CLOT
Zn-finger containing protein {ECO:0000313|EMBL:CDD73103.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Zn-finger containing protein
L1_008_000M1_scaffold_227_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13256..13477)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34513.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_227_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13498..14493)
DNA (996bp) protein (332aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSZ3_9FIRM
L1_008_000M1_scaffold_227_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14506..15126)
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Roseburia sp. CAG:309 RepID=R6YL00_9FIRM
ruvA; Holliday junction DNA helicase RuvA
L1_008_000M1_scaffold_227_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15139..16716)
DNA (1578bp) protein (526aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z0X3_9FIRM
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:CDD34516.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
phospholipase D/transphosphatidylase
L1_008_000M1_scaffold_227_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16916..18034
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34517.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
exonuclease-like protein
L1_008_000M1_scaffold_227_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18021..18533)
DNA (513bp) protein (171aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEX0_9FIRM
L1_008_000M1_scaffold_227_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18567..20561)
DNA (1995bp) protein (665aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34519.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Leucyl aminopeptidase (aminopeptidase T)
L1_008_000M1_scaffold_227_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20965..22614)
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z342_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35326.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
phosphoribulokinase/uridine kinase
L1_008_000M1_scaffold_227_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22635..23333)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YN94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35325.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted SAM-dependent methyltransferase
L1_008_000M1_scaffold_227_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23333..24460)
DNA (1128bp) protein (376aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia sp. CAG:309 RepID=R6YV92_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
RNA polymerase, sigma 70 subunit, RpoD
L1_008_000M1_scaffold_227_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24501..26264)
DNA (1764bp) protein (588aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
DNA primase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YH74_9FIRM
DNA primase
L1_008_000M1_scaffold_227_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26299..27366)
DNA (1068bp) protein (356aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZXW4_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
deoxyguanosinetriphosphate triphosphohydrolase-like protein
L1_008_000M1_scaffold_227_30
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27456..27713
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z337_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35321.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
Displaying items 1-30 of 65 in total

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