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L1_008_000M1_scaffold_324

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_324_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

359..550
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35134.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_324_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

590..1069
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35134.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_324_3
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(931..1833)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QXQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF42080.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_324_4
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1835..3178)
DNA (1344bp) protein (448aa)
Transporter n=1 Tax=Roseburia sp. CAG:182 RepID=R7QV65_9FIRM
Transporter {ECO:0000313|EMBL:CDF42079.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
ATPase-like protein
L1_008_000M1_scaffold_324_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3369..4187)
DNA (819bp) protein (273aa)
Polysaccharide deacetylase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEH9_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CDD34398.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
polysaccharide deacetylase
L1_008_000M1_scaffold_324_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4199..5101)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34399.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_324_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5098..5595)
DNA (498bp) protein (166aa)
RNA polymerase sigma factor n=1 Tax=Roseburia sp. CAG:309 RepID=R6YKH2_9FIRM
RNA polymerase sigma factor {ECO:0000313|EMBL:CDD34400.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ECF subfamily RNA polymerase sigma-24 factor
L1_008_000M1_scaffold_324_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5731..6645)
DNA (915bp) protein (305aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Quinolinate synthetase complex A subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z0H8_9FIRM
quinolinate synthetase complex subunit alpha
L1_008_000M1_scaffold_324_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6673..8409)
DNA (1737bp) protein (579aa)
ABC transporter ATP-binding/permease protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZV78_9FIRM
ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:CDD34402.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ABC transporter ATP-binding protein/permease
L1_008_000M1_scaffold_324_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8410..10131)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34403.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_324_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10154..12142)
DNA (1989bp) protein (663aa)
Arylsulfotransferase (ASST) n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSJ1_9FIRM
Arylsulfotransferase (ASST) {ECO:0000313|EMBL:CDD34404.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Arylsulfotransferase (ASST).
L1_008_000M1_scaffold_324_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12369..13940)
DNA (1572bp) protein (524aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ribonuclease Y n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5E5_9FIRM
RNA binding metal dependent phosphohydrolase
L1_008_000M1_scaffold_324_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14009..14497)
DNA (489bp) protein (163aa)
Regulatory protein RecX n=1 Tax=Roseburia sp. CAG:309 RepID=R7A023_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_324_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14609..15688)
DNA (1080bp) protein (360aa)
Protein RecA n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJG9_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
recA; recombinase A
L1_008_000M1_scaffold_324_15
unknown

Not on your lists

comp(15856..16386)
DNA (531bp) protein (177aa)

This feature has no annotations

L1_008_000M1_scaffold_324_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16462..17436)
DNA (975bp) protein (325aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
tRNA-dihydrouridine synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z3U2_9FIRM
tRNA-U20-dihydrouridine synthase
L1_008_000M1_scaffold_324_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17441..18226)
DNA (786bp) protein (262aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Type III pantothenate kinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YNW4_9FIRM
Baf family transcriptional activator
L1_008_000M1_scaffold_324_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18239..18565)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YVY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35514.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_324_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18569..19942)
DNA (1374bp) protein (458aa)
Citrate synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YHV2_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
citrate synthase
L1_008_000M1_scaffold_324_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19976..20959)
DNA (984bp) protein (328aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ornithine carbamoyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZYG5_9FIRM
ornithine carbamoyltransferase
L1_008_000M1_scaffold_324_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21062..22009)
DNA (948bp) protein (316aa)
Membrane protease subunit stomatin/prohibitin-like protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z3T3_9FIRM
Membrane protease subunit stomatin/prohibitin-like protein {ECO:0000313|EMBL:CDD35511.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Membrane protease subunits, stomatin/prohibitin homologs
L1_008_000M1_scaffold_324_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22019..22444)
DNA (426bp) protein (142aa)
Putative integral membrane protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YNV7_9FIRM
Putative integral membrane protein {ECO:0000313|EMBL:CDD35510.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Membrane protein implicated in regulation of membrane protease activity
L1_008_000M1_scaffold_324_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22521..23300)
DNA (780bp) protein (260aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Roseburia sp. CAG:309 RepID=R6YVY2_9FIRM
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:CDD35509.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
tRNA/rRNA methyltransferase SpoU
L1_008_000M1_scaffold_324_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23297..25885)
DNA (2589bp) protein (863aa)
YacP-like NYN domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YHV0_9FIRM
YacP-like NYN domain protein {ECO:0000313|EMBL:CDD35508.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
small GTP-binding protein domain
L1_008_000M1_scaffold_324_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25889..27031)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZYG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35507.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
permease
L1_008_000M1_scaffold_324_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27031..27540)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z3S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35506.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_324_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27544..28623)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YNV4_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
bacterial peptide chain release factor 1 (bRF-1)
L1_008_000M1_scaffold_324_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28620..29504)
DNA (885bp) protein (295aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Release factor glutamine methyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YVX7_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L1_008_000M1_scaffold_324_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29523..30557)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YHU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35503.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted metal-dependent enzyme
L1_008_000M1_scaffold_324_30
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30678..30878)
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZYF6_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
LSU ribosomal protein L31P
Displaying items 1-30 of 82 in total

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