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L1_008_000M1_scaffold_475

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_475_1
unknown

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)

This feature has no annotations

L1_008_000M1_scaffold_475_2
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

369..761
DNA (393bp) protein (131aa)
Predicted transcriptional regulators n=1 Tax=Clostridium sp. CAG:75 RepID=R5TB08_9CLOT
Predicted transcriptional regulators {ECO:0000313|EMBL:CCZ54287.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_475_3
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

727..1152
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5SKD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ54285.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
L1_008_000M1_scaffold_475_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1179..1517
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YXJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36069.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_475_5
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1722..2117)
DNA (396bp) protein (132aa)
SH3 type 3 domain protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5SJK3_9CLOT
SH3 type 3 domain protein {ECO:0000313|EMBL:CCZ53990.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
L1_008_000M1_scaffold_475_6
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2171..3232)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5ST77_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ53989.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
L1_008_000M1_scaffold_475_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3326..3805)
DNA (480bp) protein (160aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YDT7_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDD34123.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_475_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3951..5117)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZW17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34677.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_475_9
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5139..7280)
DNA (2142bp) protein (714aa)
Transcriptional accessory protein n=1 Tax=Clostridium sp. CAG:167 RepID=R5VKU6_9CLOT
Transcriptional accessory protein {ECO:0000313|EMBL:CCZ91348.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
Transcriptional accessory protein
L1_008_000M1_scaffold_475_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7502..9202)
DNA (1701bp) protein (567aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLF3_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CDD34675.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
diguanylate cyclase
L1_008_000M1_scaffold_475_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9208..10629)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34674.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
tRNA nucleotidyltransferase
L1_008_000M1_scaffold_475_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10647..11507)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YF81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34673.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_475_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11522..12262)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZW14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34672.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_475_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12317..13438)
DNA (1122bp) protein (374aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLE9_9FIRM
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 {ECO:0000313|EMBL:CDD34670.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
L1_008_000M1_scaffold_475_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13574..14950
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTE3_9FIRM
L1_008_000M1_scaffold_475_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15085..16191)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YF78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34668.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_475_17
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16210..17595)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5EFB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX86751.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
Putative virion core protein (lumpy skin disease virus)
L1_008_000M1_scaffold_475_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17752..17946)
DNA (195bp) protein (65aa)
Small acid-soluble spore proteins alpha/beta type n=1 Tax=Roseburia sp. CAG:309 RepID=R7A004_9FIRM
Small acid-soluble spore proteins alpha/beta type {ECO:0000313|EMBL:CDD36067.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Small, acid-soluble spore proteins, alpha/beta type.
L1_008_000M1_scaffold_475_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18110..18640)
DNA (531bp) protein (177aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Holliday junction resolvase RecU n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5D2_9FIRM
Holliday junction-specific endonuclease
L1_008_000M1_scaffold_475_20
Coprobacillus sp. CAG:698, Tenericutes, Bacteria

Not on your lists

comp(18695..19891)
DNA (1197bp) protein (399aa)
ATPase n=1 Tax=Coprobacillus sp. CAG:698 RepID=R5FTJ3_9FIRM
ATPase {ECO:0000313|EMBL:CCY08183.1}; TaxID=1262856 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:698.;"
Predicted ATPase (AAA+ superfamily)
L1_008_000M1_scaffold_475_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20056..20784)
DNA (729bp) protein (243aa)
Probable transcriptional regulatory protein BN600_00221 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJE5_9FIRM
Probable transcriptional regulatory protein BN600_00221 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
conserved hypothetical protein TIGR01033
L1_008_000M1_scaffold_475_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20831..21316)
DNA (486bp) protein (162aa)
Arginine repressor n=1 Tax=Roseburia sp. CAG:309 RepID=R7A001_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
arginine repressor ArgR
L1_008_000M1_scaffold_475_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21336..22154)
DNA (819bp) protein (273aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted sugar kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5C9_9FIRM
L1_008_000M1_scaffold_475_24
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22151..23002)
DNA (852bp) protein (284aa)
Hemolysin A n=1 Tax=Clostridium sp. CAG:167 RepID=R5VLF3_9CLOT
Hemolysin A {ECO:0000313|EMBL:CCZ91528.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
hemolysin A
L1_008_000M1_scaffold_475_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23006..24874)
DNA (1869bp) protein (623aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YS83_9FIRM
deoxyxylulose-5-phosphate synthase
L1_008_000M1_scaffold_475_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24894..25790)
DNA (897bp) protein (299aa)
Geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Polyprenyl synthetase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YE81_9FIRM
Polyprenyl synthetase {ECO:0000313|EMBL:CDD34298.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_475_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25787..25981)
DNA (195bp) protein (65aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZUV9_9FIRM
L1_008_000M1_scaffold_475_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25982..27208)
DNA (1227bp) protein (409aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
exodeoxyribonuclease VII, large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z084_9FIRM
L1_008_000M1_scaffold_475_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27201..27599)
DNA (399bp) protein (133aa)
N utilization substance protein B homolog n=1 Tax=Roseburia sp. CAG:309 RepID=R6YK75_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
NusB antitermination factor
L1_008_000M1_scaffold_475_30
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27706..28074)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YS77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34294.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
Displaying items 1-30 of 54 in total

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