ggKbase home page

L1_008_000M1_scaffold_597

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_597_1
unknown

Not on your lists

comp(2..91)
DNA (90bp) protein (30aa)

This feature has no annotations

L1_008_000M1_scaffold_597_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(88..684)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35013.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Accessory gene regulator B.
L1_008_000M1_scaffold_597_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(708..848)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZX12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35012.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_597_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1018..2262)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2B1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35011.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_597_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2262..2993)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZV48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34377.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Response regulator of the LytR/AlgR family
L1_008_000M1_scaffold_597_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3215..4018
DNA (804bp) protein (268aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z4I1_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDD35801.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Bacterial Ig-like domain (group 2).
L1_008_000M1_scaffold_597_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4065..4814)
DNA (750bp) protein (250aa)
RNA polymerase sigma factor n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZ70_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L1_008_000M1_scaffold_597_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5008..5892)
DNA (885bp) protein (295aa)
Peptidase U4 sporulation factor SpoIIGA n=1 Tax=Roseburia sp. CAG:309 RepID=R6YIN3_9FIRM
Peptidase U4 sporulation factor SpoIIGA {ECO:0000313|EMBL:CDD35803.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_597_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6087..7112)
DNA (1026bp) protein (342aa)
Peptidase U61 LD-carboxypeptidase A n=1 Tax=Roseburia sp. CAG:309 RepID=R6YWQ3_9FIRM
Peptidase U61 LD-carboxypeptidase A {ECO:0000313|EMBL:CDD35804.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
peptidase U61 LD-carboxypeptidase A
L1_008_000M1_scaffold_597_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7198..7722
DNA (525bp) protein (175aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YPL7_9FIRM
L1_008_000M1_scaffold_597_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7801..9246)
DNA (1446bp) protein (482aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZ74_9FIRM
tRNA-i(6)A37 thiotransferase enzyme MiaB
L1_008_000M1_scaffold_597_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9280..10281)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YIN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35808.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_008_000M1_scaffold_597_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10409..11536)
DNA (1128bp) protein (376aa)
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YWQ7_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CDD35809.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_597_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11533..12363)
DNA (831bp) protein (277aa)
dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:4.1.2.25)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YPM1_9FIRM
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:CDD35810.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_597_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12364..13197)
DNA (834bp) protein (278aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
dihydropteroate synthase (EC:2.5.1.15)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z4J1_9FIRM
L1_008_000M1_scaffold_597_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13260..13814)
DNA (555bp) protein (185aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5J6_9FIRM
L1_008_000M1_scaffold_597_17
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14261..14602
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HFW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB35840.1}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
L1_008_000M1_scaffold_597_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14662..16275)
DNA (1614bp) protein (538aa)
mtlD; MtlD (EC:1.1.1.57)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36153.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_597_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16297..17370)
DNA (1074bp) protein (358aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Mannonate dehydratase n=1 Tax=Roseburia sp. CAG:309 RepID=R7A079_9FIRM
D-mannonate dehydratase
L1_008_000M1_scaffold_597_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17394..19418)
DNA (2025bp) protein (675aa)
Xylan alpha-1,2-glucuronidase {ECO:0000256|RuleBase:RU361198}; EC=3.2.1.131 {ECO:0000256|RuleBase:RU361198};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Alpha-glucuronidase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5J3_9FIRM
alpha-glucuronidase
L1_008_000M1_scaffold_597_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19569..20999)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YQK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36150.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sugar ABC transporter substrate-binding protein
L1_008_000M1_scaffold_597_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21336..22334)
DNA (999bp) protein (333aa)
Sugar ABC transporter permease n=1 Tax=Roseburia sp. CAG:309 RepID=R6YXS4_9FIRM
Sugar ABC transporter permease {ECO:0000313|EMBL:CDD36149.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sugar ABC transporter permease
L1_008_000M1_scaffold_597_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22327..23238)
DNA (912bp) protein (304aa)
Putative ABC transporter permease protein YesP n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJM7_9FIRM
Putative ABC transporter permease protein YesP {ECO:0000313|EMBL:CDD36148.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sugar ABC transporter permease
L1_008_000M1_scaffold_597_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23239..25809)
DNA (2571bp) protein (857aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C6B0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73694.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L1_008_000M1_scaffold_597_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25833..26498)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YWW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35874.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_597_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26495..27988)
DNA (1494bp) protein (498aa)
NHL repeat-containing protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YIV7_9FIRM
NHL repeat-containing protein {ECO:0000313|EMBL:CDD35873.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
NHL repeat-containing protein
L1_008_000M1_scaffold_597_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28004..28867)
DNA (864bp) protein (288aa)
Putative ABC-type sugar transport system permease component n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZE1_9FIRM
Putative ABC-type sugar transport system permease component {ECO:0000313|EMBL:CDD35872.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
CUT1 family carbohydrate ABC transporter membrane protein 2
L1_008_000M1_scaffold_597_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28885..29820)
DNA (936bp) protein (312aa)
Putative ABC-type sugar transport system permease component n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z4Q0_9FIRM
Putative ABC-type sugar transport system permease component {ECO:0000313|EMBL:CDD35871.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sugar ABC transporter permease
L1_008_000M1_scaffold_597_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29841..32891)
DNA (3051bp) protein (1017aa)
Putative bacterial extracellular solute-binding protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YPS9_9FIRM
Putative bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CDD35870.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sugar ABC transporter substrate-binding protein
L1_008_000M1_scaffold_597_30
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33183..34775
DNA (1593bp) protein (531aa)
alpha-N-arabinofuranosidase (EC:3.2.1.55)
Alpha-N-arabinofuranosidase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YWV8_9FIRM
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:CDD35869.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Displaying items 1-30 of 44 in total

View Taxonomy