ggKbase home page

L1_008_000M1_scaffold_681

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_681_1
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

437..2713
DNA (2277bp) protein (759aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RNU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42333.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Bacterial surface proteins containing Ig-like domains
L1_008_000M1_scaffold_681_2
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2813..3004)
DNA (192bp) protein (64aa)
Prevent-host-death family protein n=2 Tax=Coprococcus RepID=A8SVP5_9FIRM
Prevent-host-death family protein {ECO:0000313|EMBL:CCZ93053.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
L1_008_000M1_scaffold_681_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3119..3325
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C970_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73873.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L1_008_000M1_scaffold_681_4
unknown

Not on your lists

3295..3432
DNA (138bp) protein (46aa)

This feature has no annotations

L1_008_000M1_scaffold_681_5
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3546..3827
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2ANW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ28168.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
L1_008_000M1_scaffold_681_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3819..4079)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z3Y7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35576.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_681_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4872..6050)
DNA (1179bp) protein (393aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTX4_9FIRM
L1_008_000M1_scaffold_681_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6178..7200)
DNA (1023bp) protein (341aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLX3_9FIRM
L1_008_000M1_scaffold_681_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7350..8879
DNA (1530bp) protein (510aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1R4_9FIRM
hypothetical protein
L1_008_000M1_scaffold_681_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8872..9582
DNA (711bp) protein (237aa)
Response regulator receiver domain-containing protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWI9_9FIRM
Response regulator receiver domain-containing protein {ECO:0000313|EMBL:CDD34862.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_681_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9662..10684
DNA (1023bp) protein (341aa)
Sporulation integral membrane protein YtvI n=1 Tax=Clostridium sp. CAG:62 RepID=R7C814_9CLOT
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CDD73877.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
sporulation integral membrane protein YtvI
L1_008_000M1_scaffold_681_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10727..11728
DNA (1002bp) protein (334aa)
Spore coat protein CotS family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTX8_9FIRM
Spore coat protein CotS family {ECO:0000313|EMBL:CDD34864.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
CotS family spore coat protein
L1_008_000M1_scaffold_681_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11781..13091
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34865.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_681_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13111..14838
DNA (1728bp) protein (576aa)
alpha-phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1R8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34866.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_681_15
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14861..17101
DNA (2241bp) protein (747aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
glycogen branching enzyme (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Clostridium sp. CAG:167 RepID=R5VRL9_9CLOT
L1_008_000M1_scaffold_681_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17116..17763
DNA (648bp) protein (216aa)
Thymidylate synthase flavin-dependent n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVN3_9FIRM
Thymidylate synthase flavin-dependent {ECO:0000313|EMBL:CDD34522.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
thymidylate synthase, flavin-dependent
L1_008_000M1_scaffold_681_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17757..19511)
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z0X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34521.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_681_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19571..20641)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YL08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34520.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_681_19
unknown

Not on your lists

20855..21493
DNA (639bp) protein (213aa)

This feature has no annotations

L1_008_000M1_scaffold_681_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21522..22007
DNA (486bp) protein (162aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia sp. CAG:309 RepID=R7A084_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDD36157.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_681_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21961..22692
DNA (732bp) protein (244aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia sp. CAG:309 RepID=R7A084_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDD36157.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_681_22
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23061..24554)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=2 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L9X3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET62380.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ISNCY family transposase
L1_008_000M1_scaffold_681_23
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24717..26900
DNA (2184bp) protein (728aa)
Carbohydrate-Binding Module Family 2 candidate secreted modular protein with two N-terminal CBM2 domains n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZAL1_EUBR3
Carbohydrate-Binding Module Family 2 candidate secreted modular protein with two N-terminal CBM2 domains
Carbohydrate-Binding Module Family 2 candidate secreted modular protein with two N-terminal CBM2 domains {ECO:0000313|EMBL:ACR74072.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_008_000M1_scaffold_681_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27020..28186
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YDY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34183.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
cell surface protein
L1_008_000M1_scaffold_681_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28408..28659)
DNA (252bp) protein (84aa)
Type II secretory pathway, component ExeA (Predicted ATPase) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L0R2_9FIRM
Type II secretory pathway, component ExeA (predicted ATPase)
Type II secretory pathway, component ExeA (Predicted ATPase) {ECO:0000313|EMBL:CBL13202.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_681_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28769..29170
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZXW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35327.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_681_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29310..29504
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YH78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35328.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_681_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29781..30149
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35014.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_681_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30101..30412
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35014.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_681_30
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30429..30683
DNA (255bp) protein (85aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:167 RepID=R5W528_9CLOT
Acyl carrier protein {ECO:0000313|EMBL:CCZ90851.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
Displaying items 1-30 of 41 in total

View Taxonomy