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L1_008_000M1_scaffold_826

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_826_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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232..537
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YL21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34535.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_826_2
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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689..919
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDP1_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
acyl carrier protein
L1_008_000M1_scaffold_826_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1100..2032
DNA (933bp) protein (311aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z0C6_9FIRM
L1_008_000M1_scaffold_826_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2046..2789
DNA (744bp) protein (248aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YKB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34340.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_826_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2813..4054
DNA (1242bp) protein (414aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC:2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSC1_9FIRM
L1_008_000M1_scaffold_826_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4169..4594
DNA (426bp) protein (142aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEB9_9FIRM
L1_008_000M1_scaffold_826_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4678..6930
DNA (2253bp) protein (751aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZV05_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:CDD34337.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_826_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6951..7685
DNA (735bp) protein (245aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z0C1_9FIRM
L1_008_000M1_scaffold_826_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7857..9932
DNA (2076bp) protein (692aa)
Predicted exporters of the RND superfamily n=1 Tax=Roseburia sp. CAG:309 RepID=R6YKB1_9FIRM
Predicted exporters of the RND superfamily {ECO:0000313|EMBL:CDD34335.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted exporters of the RND superfamily
L1_008_000M1_scaffold_826_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9957..11942
DNA (1986bp) protein (662aa)
Gram-positive signal peptide protein YSIRK family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSB4_9FIRM
Gram-positive signal peptide protein YSIRK family {ECO:0000313|EMBL:CDD34334.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
X-X-X-Leu-X-X-Gly heptad repeats
L1_008_000M1_scaffold_826_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11967..12587
DNA (621bp) protein (207aa)
TetR family Bacterial regulatory protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEB6_9FIRM
TetR family Bacterial regulatory protein {ECO:0000313|EMBL:CDD34333.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Transcriptional regulator
L1_008_000M1_scaffold_826_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12733..13542
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8V1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74370.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L1_008_000M1_scaffold_826_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13546..14160
DNA (615bp) protein (205aa)
Putative hydrolases of HD superfamily n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZV00_9FIRM
Putative hydrolases of HD superfamily {ECO:0000313|EMBL:CDD34332.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hydrolases of HD superfamily
L1_008_000M1_scaffold_826_14
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14138..14941
DNA (804bp) protein (268aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NGT5_9FIRM
L1_008_000M1_scaffold_826_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14898..15500
DNA (603bp) protein (201aa)
Predicted double-stranded RNA/RNA-DNA hybrid binding protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZXK7_9FIRM
Predicted double-stranded RNA/RNA-DNA hybrid binding protein {ECO:0000313|EMBL:CDD35227.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ribonuclease HI
L1_008_000M1_scaffold_826_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15576..16301
DNA (726bp) protein (242aa)
GTP pyrophosphokinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGW0_9FIRM
GTP pyrophosphokinase {ECO:0000313|EMBL:CDD35228.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
GTP pyrophosphokinase (putative)
L1_008_000M1_scaffold_826_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16334..18427)
DNA (2094bp) protein (698aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUY5_9FIRM
L1_008_000M1_scaffold_826_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18424..19938)
DNA (1515bp) protein (505aa)
Ppx/GppA phosphatase family protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YN07_9FIRM
Ppx/GppA phosphatase family protein {ECO:0000313|EMBL:CDD35230.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ppx/GppA phosphatase
L1_008_000M1_scaffold_826_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20289..21317
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDQ1_9CLOT
L1_008_000M1_scaffold_826_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21401..22294
DNA (894bp) protein (298aa)
Lipid kinase YegS/Rv2252/BmrU family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGW6_9FIRM
Lipid kinase YegS/Rv2252/BmrU family {ECO:0000313|EMBL:CDD35233.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
putative lipid kinase
L1_008_000M1_scaffold_826_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22422..24071
DNA (1650bp) protein (550aa)
Fibronectin type III domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUZ2_9FIRM
Fibronectin type III domain protein {ECO:0000313|EMBL:CDD35234.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L1_008_000M1_scaffold_826_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24497..25657
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBV0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74753.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L1_008_000M1_scaffold_826_23
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25671..25850
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GE36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY14209.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
hypothetical protein
L1_008_000M1_scaffold_826_24
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25937..28387
DNA (2451bp) protein (817aa)
Repeat protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWP3_9CLOT
Repeat protein {ECO:0000313|EMBL:EDO60190.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L1_008_000M1_scaffold_826_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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28611..29540
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FVJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18573.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L1_008_000M1_scaffold_826_26
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30119..30304
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VRR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC94811.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
serine/threonine protein kinase
L1_008_000M1_scaffold_826_27
Streptomyces sp. SPB74, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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30516..31277
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00037A48A7
Serine/threonine protein kinase {ECO:0000313|EMBL:EDY46861.2}; TaxID=465543 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SPB74).;"
protein kinase
L1_008_000M1_scaffold_826_28
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31322..32647
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8R1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74559.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L1_008_000M1_scaffold_826_29
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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32729..34612
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 5_2_54FAA RepID=U5F537_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE45470.1}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
Displaying 29 items

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