ggKbase home page

L1_008_000M1_scaffold_1238

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1238_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

209..3760
DNA (3552bp) protein (1184aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
pyruvate-ferredoxin (flavodoxin) oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MPL0_9FIRM
L1_008_000M1_scaffold_1238_2
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3857..4069)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BNT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI79789.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Predicted transcriptional regulator
L1_008_000M1_scaffold_1238_3
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4180..4896
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CIZ9_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG50256.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
ErfK/YbiS/YcfS/YnhG family protein
L1_008_000M1_scaffold_1238_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5005..6000
DNA (996bp) protein (332aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZK60_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76766.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000M1_scaffold_1238_5
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

6014..7162
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CU05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX71410.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
hypothetical protein
L1_008_000M1_scaffold_1238_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(7231..8349)
DNA (1119bp) protein (373aa)
epsD; putative glycosyltransferase EpsD (EC:2.4.-.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YAM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13463.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L1_008_000M1_scaffold_1238_7
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

8515..9894
DNA (1380bp) protein (460aa)
undecaprenyl-phosphate glucose phosphotransferase (EC:2.7.8.-)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YC26_9FIRM
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:ESL13933.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L1_008_000M1_scaffold_1238_8
Clostridiales bacterium S5-A14a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9891..10466
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037416F2
Uncharacterized protein {ECO:0000313|EMBL:KGF09664.1}; TaxID=1230734 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Clostridiales bacterium S5-A14a.;"
Predicted metal-binding protein (DUF2284).
L1_008_000M1_scaffold_1238_9
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10470..11135
DNA (666bp) protein (222aa)
dnaQ; putative DNA polymerase III epsilon subunit (EC:2.7.7.7)
Putative DNA polymerase III epsilon subunit n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TW40_9FIRM
Putative DNA polymerase III epsilon subunit {ECO:0000313|EMBL:CDC72111.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L1_008_000M1_scaffold_1238_10
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

comp(11191..12108)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CY06_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX71439.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
L1_008_000M1_scaffold_1238_11
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12105..12575)
DNA (471bp) protein (157aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I482_CLOCE
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACL76515.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L1_008_000M1_scaffold_1238_12
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12805..13176
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VRE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ35350.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_1238_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

13169..13906
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YEY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14923.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
ABC transporter
L1_008_000M1_scaffold_1238_14
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13896..14747
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000368BE12
Uncharacterized protein {ECO:0000313|EMBL:KEZ91126.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
ABC transporter permease
L1_008_000M1_scaffold_1238_15
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14943..15401)
DNA (459bp) protein (153aa)
Arginine repressor n=2 Tax=root RepID=R5ATY4_9FIRM
argR; arginine repressor
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_1238_16
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15398..16738)
DNA (1341bp) protein (447aa)
Transcriptional regulator, AraC family n=1 Tax=Solobacterium moorei F0204 RepID=E7ML12_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFW25135.1}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moorei F0204.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_1238_17
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16936..18381)
DNA (1446bp) protein (482aa)
C4-dicarboxylate anaerobic carrier n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLX3_9ACTN
C4-dicarboxylate anaerobic carrier {ECO:0000313|EMBL:EEE17314.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
arginine/ornithine antiporter
L1_008_000M1_scaffold_1238_18
Oribacterium sp. oral taxon 108, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18451..19389)
DNA (939bp) protein (313aa)
Carbamate kinase n=1 Tax=Oribacterium sp. oral taxon 108 str. F0425 RepID=F5T3I2_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=904296 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 108 str. F0425.;"
arcC; carbamate kinase
L1_008_000M1_scaffold_1238_19
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19402..20394)
DNA (993bp) protein (331aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
Ornithine carbamoyltransferase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLX2_9ACTN
ornithine carbamoyltransferase
L1_008_000M1_scaffold_1238_20
Atopobium sp. oral taxon 199, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20466..21695)
DNA (1230bp) protein (410aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; TaxID=1203602 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 199 str. F0494.;"
Arginine deiminase n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 PF8_9ACTN">RepID=S2ZPF8_9ACTN
arginine deiminase
L1_008_000M1_scaffold_1238_21
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(22169..23827)
DNA (1659bp) protein (553aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moorei F0204.;"
Arginine--tRNA ligase n=1 Tax=Solobacterium moorei F0204 RepID=E7MLI7_9FIRM
argS; arginyl-tRNA synthetase
L1_008_000M1_scaffold_1238_22
Lachnoanaerobaculum sp. OBRC5-5, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24340..25506)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0XI23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJZ70266.1}; TaxID=936595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. OBRC5-5.;"
Site-specific recombinase XerD
L1_008_000M1_scaffold_1238_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25598..25819)
DNA (222bp) protein (74aa)
DNA binding domain, excisionase family (Fragment) n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AYV8_9CLOT
DNA binding domain, excisionase family {ECO:0000313|EMBL:ERI71054.1}; Flags: Fragment;; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
DNA binding domain, excisionase family
L1_008_000M1_scaffold_1238_24
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

26002..26184
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HRJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY27116.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
Displaying 24 items

View Taxonomy