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L1_008_030G1_scaffold_49

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_030G1_scaffold_49_1
unknown

Not on your lists

comp(1510..1623)
DNA (114bp) protein (38aa)

This feature has no annotations

L1_008_030G1_scaffold_49_2
Bifidobacterium tsurumiense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3920..4216)
DNA (297bp) protein (99aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=356829 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium tsurumiense.;"
CRISPR-associated endoribonuclease Cas2 n=9 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A959_BIFLB
CRISPR-associated Cas2 family protein
L1_008_030G1_scaffold_49_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4228..5817)
DNA (1590bp) protein (530aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
CRISPR-associated endonuclease Cas1 n=2 Tax=Bifidobacterium dentium RepID=E0Q565_9BIFI
hypothetical protein
L1_008_030G1_scaffold_49_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5836..6897)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q564_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42308.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
csb3; CRISPR-associated Csb3 family protein
L1_008_030G1_scaffold_49_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6897..10088)
DNA (3192bp) protein (1064aa)
CRISPR-associated helicase Cas3, Anaes-subtype n=2 Tax=Bifidobacterium dentium RepID=E0Q563_9BIFI
CRISPR-associated helicase Cas3, Anaes-subtype {ECO:0000313|EMBL:EFM42307.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
cas3; CRISPR-associated helicase Cas3 family protein
L1_008_030G1_scaffold_49_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10076..11824)
DNA (1749bp) protein (583aa)
CRISPR-associated protein, GSU0054 family (Cas_GSU0054) n=2 Tax=Bifidobacterium dentium RepID=E0Q562_9BIFI
CRISPR-associated protein, GSU0054 family (Cas_GSU0054) {ECO:0000313|EMBL:EFM42306.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
cas5_cas6; CRISPR-associated Cas5 / CRISPR-associated protein Cas6
L1_008_030G1_scaffold_49_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11826..13028)
DNA (1203bp) protein (401aa)
Putative CRISPR-associated protein, GSU0053 family n=2 Tax=Bifidobacterium dentium RepID=E0Q561_9BIFI
Putative CRISPR-associated protein, GSU0053 family {ECO:0000313|EMBL:EFM42305.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
cas7; CRISPR-associated Cas7 family protein
L1_008_030G1_scaffold_49_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13974..14588)
DNA (615bp) protein (205aa)
Phospholipase/Carboxylesterase n=2 Tax=Bifidobacterium dentium RepID=D2Q5L1_BIFDB
phospholipase/Carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ADB10226.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_030G1_scaffold_49_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14821..15471
DNA (651bp) protein (217aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
DNA-3-methyladenine glycosylase (EC:3.2.2.21)
Putative 3-methyladenine DNA glycosylase n=2 Tax=Bifidobacterium dentium RepID=E0Q571_9BIFI
L1_008_030G1_scaffold_49_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15548..16396)
DNA (849bp) protein (283aa)
Phospholipase, patatin family n=2 Tax=Bifidobacterium dentium RepID=E0Q572_9BIFI
Phospholipase, patatin family {ECO:0000313|EMBL:EFM42247.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
phospholipase
L1_008_030G1_scaffold_49_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16455..17231)
DNA (777bp) protein (259aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=2 Tax=Bifidobacterium dentium RepID=E0Q573_9BIFI
L1_008_030G1_scaffold_49_12
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17295..18194
DNA (900bp) protein (300aa)
Diaminopimelate epimerase {ECO:0000256|SAAS:SAAS00028055}; EC=5.1.1.7 {ECO:0000256|SAAS:SAAS00028063};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=2 Tax=Bifidobacterium dentium RepID=E0Q574_9BIFI
L1_008_030G1_scaffold_49_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18197..18826)
DNA (630bp) protein (210aa)
Vitamin K epoxide reductase family n=2 Tax=Bifidobacterium dentium RepID=E0Q575_9BIFI
Vitamin K epoxide reductase family {ECO:0000313|EMBL:EFM42250.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Vitamin K epoxide reductase
L1_008_030G1_scaffold_49_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18911..19849
DNA (939bp) protein (313aa)
PHP domain protein {ECO:0000313|EMBL:EFM42251.1}; EC=3.1.3.- {ECO:0000313|EMBL:EFM42251.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
PHP domain containing protein (TRPH) (EC:2.7.7.7)
PHP domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q576_9BIFI
L1_008_030G1_scaffold_49_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19851..20075)
DNA (225bp) protein (75aa)
ATP-binding protein n=4 Tax=Bifidobacterium dentium RepID=D2Q5K3_BIFDB
ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EFM42252.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_030G1_scaffold_49_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20130..21704)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E1NBH2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42253.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
aminoglycoside phosphotransferase
L1_008_030G1_scaffold_49_17
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21775..23283
DNA (1509bp) protein (503aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.1.11.5)
UvrD/REP helicase n=2 Tax=Bifidobacterium dentium RepID=E0Q579_9BIFI
L1_008_030G1_scaffold_49_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23308..24858)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S6Q2_9BIFI
Putative hydrolase {ECO:0000313|EMBL:EFM42255.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_030G1_scaffold_49_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24880..25740
DNA (861bp) protein (287aa)
lon; peptidase S16 (EC:3.4.21.53)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S6Q3_9BIFI
Lon protease S16 C-terminal proteolytic domain protein {ECO:0000313|EMBL:ETO95762.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_030G1_scaffold_49_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25850..26266
DNA (417bp) protein (139aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S6Q4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42257.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_030G1_scaffold_49_21
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26504..26794)
DNA (291bp) protein (97aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S6Q5_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFM42258.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_030G1_scaffold_49_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26983..27363
DNA (381bp) protein (127aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S6Q6_9BIFI
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ETO95692.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
MarR family transcriptional regulator
L1_008_030G1_scaffold_49_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27706..29130
DNA (1425bp) protein (475aa)
DivIVA domain repeat protein n=2 Tax=Bifidobacterium dentium RepID=E0Q585_9BIFI
DivIVA domain repeat protein {ECO:0000313|EMBL:EFM42260.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
pyridoxine biosynthesis enzyme
L1_008_030G1_scaffold_49_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29198..30376
DNA (1179bp) protein (393aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ispC; IspC 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Bifidobacterium dentium RepID=E0Q586_9BIFI
L1_008_030G1_scaffold_49_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30443..31630
DNA (1188bp) protein (396aa)
ispG; IspG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Bifidobacterium dentium RepID=D2Q5J3_BIFDB
L1_008_030G1_scaffold_49_26
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31657..33360
DNA (1704bp) protein (568aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q588_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42263.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hydrolase
L1_008_030G1_scaffold_49_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33422..34150
DNA (729bp) protein (243aa)
DNA repair protein RecO n=4 Tax=Bifidobacterium dentium RepID=D2Q5J1_BIFDB
recO; DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_030G1_scaffold_49_28
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34156..34947
DNA (792bp) protein (264aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=3 Tax=Bifidobacterium dentium RepID=B1S6R2_9BIFI
L1_008_030G1_scaffold_49_29
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35254..36159
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6R3_9BIFI
PF13338 domain protein {ECO:0000313|EMBL:ETO95749.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
CTP synthase (UTP-ammonia lyase)
L1_008_030G1_scaffold_49_30
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36305..37549)
DNA (1245bp) protein (415aa)
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:EFM42267.1}; EC=3.2.2.1 {ECO:0000313|EMBL:EFM42267.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
iunH1; IunH1 inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.3)
Inosine-uridine preferring nucleoside hydrolase n=2 Tax=Bifidobacterium dentium RepID=E0Q592_9BIFI
Displaying items 1-30 of 178 in total

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