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L1_008_092G1_scaffold_300

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_092G1_scaffold_300_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(195..1505)
DNA (1311bp) protein (437aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SNE7_CLOSY
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:ERI80475.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_008_092G1_scaffold_300_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1644..1874
DNA (231bp) protein (77aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SNE8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95289.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
PTS HPr component phosphorylation site.
L1_008_092G1_scaffold_300_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1966..3144)
DNA (1179bp) protein (393aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Probable tRNA sulfurtransferase n=3 Tax=Clostridium RepID=E9SNE9_CLOSY
thiazole biosynthesis/tRNA modification protein ThiI
L1_008_092G1_scaffold_300_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3190..4344)
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=3 Tax=Clostridium RepID=E9SNF0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07298.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L1_008_092G1_scaffold_300_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4374..5111)
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SNF1_CLOSY
L1_008_092G1_scaffold_300_6
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5159..6115)
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=2 Tax=Clostridium RepID=E9SNF2_CLOSY
L1_008_092G1_scaffold_300_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6447..7208)
DNA (762bp) protein (254aa)
Membrane family protein n=4 Tax=Clostridium RepID=E7GJ21_CLOSY
Membrane family protein {ECO:0000313|EMBL:EGA95190.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted permeases
L1_008_092G1_scaffold_300_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7510..8694)
DNA (1185bp) protein (395aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=2 Tax=Clostridium symbiosum RepID=U2DG89_CLOSY
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ERI80482.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_008_092G1_scaffold_300_9
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8733..10547)
DNA (1815bp) protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Elongation factor 4 n=4 Tax=Clostridium RepID=E7GJ23_CLOSY
GTP-binding protein LepA
L1_008_092G1_scaffold_300_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11695..12936
DNA (1242bp) protein (414aa)
Transposase, Mutator family n=2 Tax=Clostridium symbiosum RepID=E9SNF6_CLOSY
Transposase, Mutator family {ECO:0000313|EMBL:ERI80485.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Transposase and inactivated derivatives
L1_008_092G1_scaffold_300_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13120..14643)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=2 Tax=Clostridium symbiosum RepID=E9SNF7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI80486.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L1_008_092G1_scaffold_300_12
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14758..14943)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2DG94_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI80487.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_008_092G1_scaffold_300_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14980..16038)
DNA (1059bp) protein (353aa)
Glycosyltransferase, group 2 family protein n=2 Tax=Clostridium symbiosum RepID=E9SNF8_CLOSY
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:ERI80488.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
glycosyl transferase family 2
L1_008_092G1_scaffold_300_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16108..17220)
DNA (1113bp) protein (371aa)
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SNF9_CLOSY
Thiamine pyrophosphate enzyme {ECO:0000313|EMBL:EGA95204.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain./Thiamine pyrophosphate enzyme, central domain.
L1_008_092G1_scaffold_300_15
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17174..17707)
DNA (534bp) protein (178aa)
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein n=2 Tax=Clostridium symbiosum RepID=E9SNG0_CLOSY
Thiamine pyrophosphate enzyme, TPP binding domain protein {ECO:0000313|EMBL:ERI80490.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
L1_008_092G1_scaffold_300_16
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17743..18462)
DNA (720bp) protein (240aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Clostridium symbiosum RepID=E9SNG1_CLOSY
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L1_008_092G1_scaffold_300_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18468..19526)
DNA (1059bp) protein (353aa)
Histidinol-phosphate transaminase (EC:2.6.1.9)
Putative histidinol-phosphate transaminase n=2 Tax=Clostridium symbiosum RepID=E9SNG2_CLOSY
Putative histidinol-phosphate transaminase {ECO:0000313|EMBL:ERI80492.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_008_092G1_scaffold_300_18
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19666..20814)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=2 Tax=Clostridium symbiosum RepID=E9SNG3_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI80493.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L1_008_092G1_scaffold_300_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20876..22033)
DNA (1158bp) protein (386aa)
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase n=2 Tax=Clostridium symbiosum RepID=E9SNG4_CLOSY
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase {ECO:0000313|EMBL:ERI80494.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
CDP-glycerol:poly(glycerophosphate)glycerophosphotransferase
L1_008_092G1_scaffold_300_20
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22165..23019)
DNA (855bp) protein (285aa)
NAD dependent epimerase/dehydratase family protein n=2 Tax=Clostridium symbiosum RepID=E9SNG5_CLOSY
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:ERI80495.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
dTDP-4-dehydrorhamnose reductase
L1_008_092G1_scaffold_300_21
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23021..24061)
DNA (1041bp) protein (347aa)
Polysaccharide biosynthesis protein n=2 Tax=Clostridium symbiosum RepID=E9SNG6_CLOSY
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ERI80496.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Predicted nucleoside-diphosphate sugar epimerases
L1_008_092G1_scaffold_300_22
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24058..25260)
DNA (1203bp) protein (401aa)
Glycosyltransferase, group 1 family protein n=3 Tax=Clostridium symbiosum RepID=E9SNG7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95212.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
group 1 glycosyl transferase
L1_008_092G1_scaffold_300_23
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25341..26279)
DNA (939bp) protein (313aa)
3-beta hydroxysteroid dehydrogenase/isomerase family protein n=2 Tax=Clostridium symbiosum RepID=E9SNG8_CLOSY
3-beta hydroxysteroid dehydrogenase/isomerase family protein {ECO:0000313|EMBL:ERI80498.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
nucleoside-diphosphate-sugar epimerases-like protein
L1_008_092G1_scaffold_300_24
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26276..26899)
DNA (624bp) protein (208aa)
Bacterial sugar transferase n=3 Tax=Clostridium RepID=U2BQS5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07279.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Sugar transferases involved in lipopolysaccharide synthesis
L1_008_092G1_scaffold_300_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26925..27605)
DNA (681bp) protein (227aa)
Transcription termination/antitermination factor NusG n=2 Tax=Clostridium symbiosum RepID=E9SNH0_CLOSY
Transcription termination/antitermination factor NusG {ECO:0000313|EMBL:ERI80500.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Transcription antiterminator
L1_008_092G1_scaffold_300_26
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27639..28217)
DNA (579bp) protein (193aa)
Transcription antiterminator n=5 Tax=Clostridium RepID=E7GJ47_CLOSY
Transcription antiterminator {ECO:0000313|EMBL:EGA95216.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Transcription antiterminator
L1_008_092G1_scaffold_300_27
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28479..29633
DNA (1155bp) protein (385aa)
CAAX amino terminal protease family protein n=2 Tax=Clostridium symbiosum RepID=U2DGA9_CLOSY
CAAX amino terminal protease family protein {ECO:0000313|EMBL:ERI80502.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
membrane protein
L1_008_092G1_scaffold_300_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29639..31102)
DNA (1464bp) protein (488aa)
Stage II sporulation protein P n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2C904_CLOSY
Stage II sporulation protein P {ECO:0000313|EMBL:ERI80503.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
stage II sporulation protein P
L1_008_092G1_scaffold_300_29
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31418..32443)
DNA (1026bp) protein (342aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
GPR endopeptidase (EC:3.4.24.78)
Germination protease n=3 Tax=Clostridium symbiosum RepID=E7GJ50_CLOSY
L1_008_092G1_scaffold_300_30
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32658..32921
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=3 Tax=Clostridium RepID=E7GJ51_CLOSY
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
30S ribosomal protein S20
Displaying 30 items

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