ggKbase home page

L1_008_092G1_scaffold_314

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_092G1_scaffold_314_1
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


460..948
DNA (489bp) protein (163aa)
50S ribosomal protein L10 n=4 Tax=Clostridium RepID=E7GR06_CLOSY
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
LSU ribosomal protein L10P
L1_008_092G1_scaffold_314_2
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1064..1438
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=4 Tax=Clostridium RepID=E7GR07_CLOSY
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
LSU ribosomal protein L12P
L1_008_092G1_scaffold_314_3
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1543..2181
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BXZ0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI77095.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L1_008_092G1_scaffold_314_4
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2293..2967
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=2 Tax=Clostridium symbiosum RepID=E7GR09_CLOSY
L1_008_092G1_scaffold_314_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2996..3835
DNA (840bp) protein (280aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=4 Tax=Clostridium RepID=E7GR10_CLOSY
L1_008_092G1_scaffold_314_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4129..4899
DNA (771bp) protein (257aa)
Peptidoglycan N-acetylglucosamine deacetylase A n=2 Tax=Clostridium symbiosum RepID=E7GR11_CLOSY
Peptidoglycan N-acetylglucosamine deacetylase A {ECO:0000313|EMBL:EGA92761.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
polysaccharide deacetylase
L1_008_092G1_scaffold_314_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4915..6237
DNA (1323bp) protein (441aa)
Recombination factor protein RarA n=3 Tax=Clostridium symbiosum RepID=E9SRN3_CLOSY
ATPase, AAA family {ECO:0000313|EMBL:ERI77099.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
ATPase related to the helicase subunit of the Holliday junction resolvase
L1_008_092G1_scaffold_314_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6510..8327
DNA (1818bp) protein (606aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Transcription termination factor Rho n=2 Tax=Clostridium symbiosum RepID=E7GR13_CLOSY
transcription termination factor Rho
L1_008_092G1_scaffold_314_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8531..8740
DNA (210bp) protein (70aa)
50S ribosomal protein L31 n=4 Tax=Clostridium RepID=E9SRN1_CLOSY
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
LSU ribosomal protein L31P
L1_008_092G1_scaffold_314_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8896..9837
DNA (942bp) protein (314aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=E9SRN0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA92765.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted metal-dependent enzyme
L1_008_092G1_scaffold_314_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9834..10898
DNA (1065bp) protein (355aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Release factor glutamine methyltransferase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SRM9_CLOSY
protein-(glutamine-N5) methyltransferase, release factor-specific
L1_008_092G1_scaffold_314_12
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10954..12027
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 n=4 Tax=Clostridium RepID=E7GR17_CLOSY
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
bacterial peptide chain release factor 1 (bRF-1)
L1_008_092G1_scaffold_314_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12225..12620
DNA (396bp) protein (132aa)
O-6-methylguanine DNA methyltransferase n=2 Tax=Clostridium symbiosum RepID=E7GR18_CLOSY
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:EGA92768.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_008_092G1_scaffold_314_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12607..13341
DNA (735bp) protein (245aa)
Methyltransferase domain protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SRM6_CLOSY
Methyltransferase type 11 {ECO:0000313|EMBL:EGA92769.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
methyltransferase
L1_008_092G1_scaffold_314_15
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13406..13543
DNA (138bp) protein (46aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FCJ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05790.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
putative DNA-binding protein
L1_008_092G1_scaffold_314_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14276..14821)
DNA (546bp) protein (182aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=B5CM81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCK89141.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
hypothetical protein
L1_008_092G1_scaffold_314_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15021..15797)
DNA (777bp) protein (259aa)
Streptomycin 3''-adenylyltransferase {ECO:0000313|EMBL:CCK89147.1}; EC=2.7.7.47 {ECO:0000313|EMBL:CCK89147.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Nucleotidyltransferase domain protein n=8 Tax=Bacteria RepID=D5Q6H1_CLODI
streptomycin 3''-adenylyltransferase
L1_008_092G1_scaffold_314_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15822..16592)
DNA (771bp) protein (257aa)
Phosphorylase family n=9 Tax=Bacteria RepID=D1K5V5_9BACE
purine or other phosphorylase family 1
Pnp/Udp family phosphorylase {ECO:0000313|EMBL:CCK89146.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L1_008_092G1_scaffold_314_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16617..17414)
DNA (798bp) protein (266aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=D5Q6H3_CLODI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFH06515.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L1_008_092G1_scaffold_314_20
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17754..18167
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B523_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG91443.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
L1_008_092G1_scaffold_314_21
Bacteroides sp. 4_1_36, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18279..18674
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B3 RepID=N9ZSK2_9CLOT
Replication initiator protein A {ECO:0000313|EMBL:EFV24289.1}; TaxID=457393 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_1_36.;"
Replication initiator protein A (RepA) N-terminus.
L1_008_092G1_scaffold_314_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18857..19801
DNA (945bp) protein (315aa)
Plasmid recombination enzyme n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8U3_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:EEU95798.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Plasmid recombination enzyme.
L1_008_092G1_scaffold_314_23
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19874..20068
DNA (195bp) protein (65aa)
Uncharacterized protein n=18 Tax=Firmicutes RepID=D5Q544_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE13055.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L1_008_092G1_scaffold_314_24
Dialister succinatiphilus, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20169..21791
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B3 RepID=R0B2D4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHO63174.1}; TaxID=742743 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister.;" source="Dialister succinatiphilus YIT 11850.;"
L1_008_092G1_scaffold_314_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21949..22293
DNA (345bp) protein (115aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SRM5_CLOSY
XRE family Transcriptional regulator {ECO:0000313|EMBL:EGA92770.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
helix-turn-helix domain-containing protein
L1_008_092G1_scaffold_314_26
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22856..23116
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FCJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05789.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_092G1_scaffold_314_27
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23192..24040
DNA (849bp) protein (283aa)
Sortase, SrtB family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BXY0_CLOSY
Sortase, SrtB family {ECO:0000313|EMBL:ERI77085.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
sortase
L1_008_092G1_scaffold_314_28
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24277..25170
DNA (894bp) protein (298aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=3 Tax=Clostridium RepID=E7GR24_CLOSY
L1_008_092G1_scaffold_314_29
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25207..26229
DNA (1023bp) protein (341aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SRM1_CLOSY
L1_008_092G1_scaffold_314_30
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26242..27102
DNA (861bp) protein (287aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=3 Tax=Clostridium symbiosum RepID=E9SRM0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA92776.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Displaying items 1-30 of 33 in total

View Taxonomy