ggKbase home page

L1_008_124G1_scaffold_548

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_124G1_scaffold_548_1
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..874)
DNA (873bp) protein (291aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HPU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE96525.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Predicted Zn-dependent peptidases, insulinase-like
L1_008_124G1_scaffold_548_2
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(946..1773)
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HPU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE96526.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L1_008_124G1_scaffold_548_3
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1817..3052)
DNA (1236bp) protein (412aa)
Peptidase, U32 family {ECO:0000313|EMBL:EEQ57768.1}; EC=3.4.-.- {ECO:0000313|EMBL:EEQ57768.1};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHT3_9FIRM
L1_008_124G1_scaffold_548_4
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3077..3724)
DNA (648bp) protein (216aa)
O-methyltransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHT4_9FIRM
O-methyltransferase {ECO:0000313|EMBL:EEQ57769.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Predicted O-methyltransferase
L1_008_124G1_scaffold_548_5
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3721..4434)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ57770.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
aminodeoxychorismate lyase
L1_008_124G1_scaffold_548_6
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4502..6889)
DNA (2388bp) protein (796aa)
Ribonuclease J 1 {ECO:0000313|EMBL:KJJ72528.1}; EC=3.1.-.- {ECO:0000313|EMBL:KJJ72528.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HPV0_9CLOT
RNA-metabolising metallo-beta-lactamase
L1_008_124G1_scaffold_548_7
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6907..7185)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HPV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE96531.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L1_008_124G1_scaffold_548_8
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7175..7621)
DNA (447bp) protein (149aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Putative Holliday junction resolvase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHT8_9FIRM
conserved hypothetical protein TIGR00250
L1_008_124G1_scaffold_548_9
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7943..8203)
DNA (261bp) protein (87aa)
UPF0297 protein CBFG_01484 n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHT9_9FIRM
UPF0297 protein CBFG_01484 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L1_008_124G1_scaffold_548_10
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8391..9764)
DNA (1374bp) protein (458aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU0_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EEQ57775.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L1_008_124G1_scaffold_548_11
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9977..10207
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ57776.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
PTS HPr component phosphorylation site.
L1_008_124G1_scaffold_548_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10313..11497)
DNA (1185bp) protein (395aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU2_9FIRM
thiamine biosynthesis/tRNA modification protein ThiI
L1_008_124G1_scaffold_548_13
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11532..12686)
DNA (1155bp) protein (385aa)
cysteine desulfurase (EC:2.8.1.7)
Aminotransferase, class V n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU3_9FIRM
Aminotransferase, class V {ECO:0000313|EMBL:EEQ57778.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L1_008_124G1_scaffold_548_14
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12810..13559)
DNA (750bp) protein (250aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU4_9FIRM
L1_008_124G1_scaffold_548_15
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13621..14577)
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU5_9FIRM
L1_008_124G1_scaffold_548_16
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14592..15347)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ57781.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L1_008_124G1_scaffold_548_17
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15761..16531)
DNA (771bp) protein (257aa)
Cell wall-binding repeat protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV0_9FIRM
Cell wall-binding repeat protein {ECO:0000313|EMBL:EEQ57785.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Glucan-binding domain (YG repeat)-like protein
L1_008_124G1_scaffold_548_18
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16740..18464
DNA (1725bp) protein (575aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEQ57787.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
ABC transporter
L1_008_124G1_scaffold_548_19
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18464..20353
DNA (1890bp) protein (630aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEQ57788.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
ATP-binding cassette subfamily B protein
L1_008_124G1_scaffold_548_20
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20350..20832
DNA (483bp) protein (161aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV4_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEQ57789.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L1_008_124G1_scaffold_548_21
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20888..21784)
DNA (897bp) protein (299aa)
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV5_9FIRM
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein {ECO:0000313|EMBL:EEQ57790.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
L1_008_124G1_scaffold_548_22
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21840..22625)
DNA (786bp) protein (262aa)
Homoserine dehydrogenase, NAD binding domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV6_9FIRM
Homoserine dehydrogenase, NAD binding domain protein {ECO:0000313|EMBL:EEQ57791.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
aspartate dehydrogenase
L1_008_124G1_scaffold_548_23
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22791..23981)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ57792.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L1_008_124G1_scaffold_548_24
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24116..24559)
DNA (444bp) protein (148aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
1-phosphofructokinase (EC:2.7.1.144)
Tagatose-6-phosphate kinase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXU3_9FIRM
Displaying 24 items

View Taxonomy