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L1_008_241G1_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 374 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_3_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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113..1054
DNA (942bp) protein (314aa)
membrane dipeptidase (EC:3.4.13.19)
Renal dipeptidase family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKV5_9FIRM
Renal dipeptidase family protein {ECO:0000313|EMBL:CCZ66358.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_241G1_scaffold_3_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1150..2412
DNA (1263bp) protein (421aa)
Putative permease n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4A5_RUMGN
Putative permease {ECO:0000313|EMBL:EDN77182.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
uracil-xanthine permease
L1_008_241G1_scaffold_3_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2480..3700)
DNA (1221bp) protein (407aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5F2_9FIRM
L1_008_241G1_scaffold_3_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3979..4494
DNA (516bp) protein (172aa)
Isochorismatase family protein {ECO:0000313|EMBL:EDN77178.1}; EC=3.-.-.- {ECO:0000313|EMBL:EDN77178.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Isochorismatase family protein n=3 Tax=Clostridiales RepID=A7B4A1_RUMGN
Amidases related to nicotinamidase
L1_008_241G1_scaffold_3_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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4529..5416
DNA (888bp) protein (296aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=4 Tax=Clostridiales RepID=A7B4A0_RUMGN
L1_008_241G1_scaffold_3_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5440..6690
DNA (1251bp) protein (417aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKU8_9FIRM
L1_008_241G1_scaffold_3_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6840..7880
DNA (1041bp) protein (347aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
N-acetyl-gamma-glutamyl-phosphate reductase, common form (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=4 Tax=Clostridiales RepID=A7B498_RUMGN
L1_008_241G1_scaffold_3_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7906..8352
DNA (447bp) protein (149aa)
N-acetylglutamate synthase (EC:2.3.1.1)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5E7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66351.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_241G1_scaffold_3_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8370..9593
DNA (1224bp) protein (408aa)
glutamate N-acetyltransferase/amino-acid acetyltransferase (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKX4_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_241G1_scaffold_3_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9638..10537
DNA (900bp) protein (300aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=3 Tax=Lachnospiraceae RepID=A7B494_RUMGN
L1_008_241G1_scaffold_3_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10527..11711
DNA (1185bp) protein (395aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
acetylornithine and succinylornithine aminotransferases (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKU3_9FIRM
L1_008_241G1_scaffold_3_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11779..12210
DNA (432bp) protein (144aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B492_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48760.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_241G1_scaffold_3_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12338..12973
DNA (636bp) protein (212aa)
ComE operon protein 1 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5E3_9FIRM
ComE operon protein 1 {ECO:0000313|EMBL:CCZ66346.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
competence protein ComEA helix-hairpin-helix repeat region
L1_008_241G1_scaffold_3_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12996..13688
DNA (693bp) protein (231aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TKW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66345.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_241G1_scaffold_3_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13726..15117
DNA (1392bp) protein (464aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Signal transduction histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TST8_9FIRM
L1_008_241G1_scaffold_3_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15128..16057
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66343.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Spore germination protein
L1_008_241G1_scaffold_3_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16060..18339
DNA (2280bp) protein (760aa)
Metallo-beta-lactamase domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBJ6_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CCZ66342.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA internalization-related competence protein ComEC/Rec2
L1_008_241G1_scaffold_3_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18327..19340
DNA (1014bp) protein (338aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III delta subunit n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5D8_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CCZ66341.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_241G1_scaffold_3_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19457..21271
DNA (1815bp) protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Elongation factor 4 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKW3_9FIRM
GTP-binding protein LepA
L1_008_241G1_scaffold_3_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21331..22842)
DNA (1512bp) protein (504aa)
Mannitol dehydrogenase domain protein n=2 Tax=Lachnospiraceae RepID=A7AYR9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48751.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
mannitol dehydrogenase domain-containing protein
L1_008_241G1_scaffold_3_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22883..24373)
DNA (1491bp) protein (497aa)
altronate dehydratase (EC:4.2.1.7)
SAF domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKS9_9FIRM
SAF domain protein {ECO:0000313|EMBL:CCZ66338.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_241G1_scaffold_3_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24606..26024
DNA (1419bp) protein (473aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uronate isomerase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBJ1_9FIRM
glucuronate isomerase
L1_008_241G1_scaffold_3_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26042..27556
DNA (1515bp) protein (505aa)
Putative transport protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5D3_9FIRM
Putative transport protein {ECO:0000313|EMBL:CCZ66336.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
putative transport protein
L1_008_241G1_scaffold_3_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27686..28048
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66335.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Lactoylglutathione lyase and related lyases
L1_008_241G1_scaffold_3_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28280..28939
DNA (660bp) protein (220aa)
Amino acid ABC transporter permease protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TST0_9FIRM
Amino acid ABC transporter permease protein {ECO:0000313|EMBL:CCZ66334.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
amino acid ABC transporter permease
L1_008_241G1_scaffold_3_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28920..29597
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66333.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
amino acid ABC transporter permease
L1_008_241G1_scaffold_3_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29601..30353
DNA (753bp) protein (251aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.-)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBI6_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ66332.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_241G1_scaffold_3_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30390..31265
DNA (876bp) protein (292aa)
ABC transporter substrate-binding protein family 3 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5C8_9FIRM
ABC transporter substrate-binding protein family 3 {ECO:0000313|EMBL:CCZ66331.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_008_241G1_scaffold_3_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31303..32301)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66330.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LacI family transcriptional regulator
L1_008_241G1_scaffold_3_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32317..33153)
DNA (837bp) protein (279aa)
Sugar phosphate isomerases/epimerases n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSS5_9FIRM
Sugar phosphate isomerases/epimerases {ECO:0000313|EMBL:CCZ66329.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Sugar phosphate isomerases/epimerases
Displaying items 1-30 of 374 in total

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