ggKbase home page

L1_008_241G1_scaffold_11

Search features with annotation key words

Displaying items 1-30 of 347 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_11_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

134..1318
DNA (1185bp) protein (395aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
xyn10A; endo-1,4-beta-xylanase (EC:3.2.1.8)
Xylanase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6APV9_9FIRM
L1_008_241G1_scaffold_11_2
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

1344..3215
DNA (1872bp) protein (624aa)
hypothetical protein n=1 Tax=Paenibacillus fonticola RepID=UPI00035E4554
sialic acid-specific 9-O-acetylesterase
Putative sialic acid-specific 9-O-acetylesterase {ECO:0000313|EMBL:ADN02582.1}; TaxID=665571 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1).;"
L1_008_241G1_scaffold_11_3
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3188..4963
DNA (1776bp) protein (592aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SWI7_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN96271.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_241G1_scaffold_11_4
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4968..6590
DNA (1623bp) protein (541aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SWI8_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN96272.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_241G1_scaffold_11_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6688..8349
DNA (1662bp) protein (554aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=3 Tax=Roseburia RepID=D4KJM7_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL13083.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_241G1_scaffold_11_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8418..9374
DNA (957bp) protein (319aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=4 Tax=Roseburia RepID=D4L0E4_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL13084.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_241G1_scaffold_11_7
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9387..10283
DNA (897bp) protein (299aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IT03_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EOS25044.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_008_241G1_scaffold_11_8
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10305..12407
DNA (2103bp) protein (701aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31106.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Beta-glucosidase-related glycosidases
L1_008_241G1_scaffold_11_9
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12433..13068
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BIW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI72170.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Predicted integral membrane protein
L1_008_241G1_scaffold_11_10
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

13061..14563
DNA (1503bp) protein (501aa)
Alpha-L-arabinofuranosidase (EC:3.2.1.55)
Alpha-N-arabinofuranosidase 2 n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RGD3_9FIRM
Alpha-N-arabinofuranosidase 2 {ECO:0000313|EMBL:CDC44414.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L1_008_241G1_scaffold_11_11
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14571..14834
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:52 RepID=R6H303_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB20667.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
hypothetical protein
L1_008_241G1_scaffold_11_12
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15383..15520
DNA (138bp) protein (46aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX69817.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L1_008_241G1_scaffold_11_13
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15690..16787)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BEU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO22421.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
tnr5; putative transposon integrase
L1_008_241G1_scaffold_11_14
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16981..17184)
DNA (204bp) protein (68aa)
Excisionase from transposon Tn916 n=19 Tax=Bacteria RepID=D4MW18_9FIRM
Excisionase from transposon Tn916.
DNA binding domain, excisionase family {ECO:0000313|EMBL:KDE18014.1}; TaxID=1338519 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis 918.;"
L1_008_241G1_scaffold_11_15
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17184..18194)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B499_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32712.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Putative phage replication protein RstA
L1_008_241G1_scaffold_11_16
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18558..19142
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9J9K2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS27817.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
putative IS1595 family transposase
L1_008_241G1_scaffold_11_17
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19215..19847
DNA (633bp) protein (211aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Eubacterium hallii CAG:12 RepID=R6FYG3_9FIRM
L1_008_241G1_scaffold_11_18
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19918..23628
DNA (3711bp) protein (1237aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IT07_9FIRM
Listeria/Bacterioides repeat
L1_008_241G1_scaffold_11_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23918..24214
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K290_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42308.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative IS3 family transposase orfA
L1_008_241G1_scaffold_11_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24412..25074
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=11 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K289_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42307.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative transposase
L1_008_241G1_scaffold_11_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25924..27297
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66309.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
PhoH family protein
L1_008_241G1_scaffold_11_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27337..29424
DNA (2088bp) protein (696aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Polyphosphate kinase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKP2_9FIRM
polyphosphate kinase
L1_008_241G1_scaffold_11_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29384..29500
DNA (117bp) protein (39aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K1G4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43859.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_241G1_scaffold_11_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29472..30128
DNA (657bp) protein (219aa)
HDIG domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3L4_RUMGN
HDIG domain protein {ECO:0000313|EMBL:EDN77540.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
HD domain.
L1_008_241G1_scaffold_11_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30268..30885
DNA (618bp) protein (206aa)
Uridine kinase {ECO:0000256|RuleBase:RU003825, ECO:0000256|SAAS:SAAS00007563}; EC=2.7.1.48 {ECO:0000256|RuleBase:RU003825, ECO:0000256|SAAS:SAAS00007538};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uridine kinase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5A4_9FIRM
uridine kinase
L1_008_241G1_scaffold_11_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30927..31796
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66305.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Mg2+ and Co2+ transporters
L1_008_241G1_scaffold_11_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31789..31911)
DNA (123bp) protein (41aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B3L8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43855.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_241G1_scaffold_11_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32420..33622
DNA (1203bp) protein (401aa)
Transporter dicarboxylate/amino acid:cation Na+/H+ symporter family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKN8_9FIRM
Transporter dicarboxylate/amino acid:cation Na+/H+ symporter family protein {ECO:0000313|EMBL:CCZ66303.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
solute carrier family 1 (glial high affinity glutamate transporter), member 2
L1_008_241G1_scaffold_11_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33758..34717
DNA (960bp) protein (320aa)
Sucrose operon repressor n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBF8_9FIRM
Sucrose operon repressor {ECO:0000313|EMBL:CCZ66302.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulator, LacI family
L1_008_241G1_scaffold_11_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34876..36801
DNA (1926bp) protein (642aa)
Phosphotransferase system EIIC n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U598_9FIRM
Phosphotransferase system EIIC {ECO:0000313|EMBL:CCZ66301.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
PTS system, glucose subfamily, IIA component
Displaying items 1-30 of 347 in total

View Taxonomy