ggKbase home page

L1_008_241G1_scaffold_161

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_161_1
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27..581
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NEH0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95552.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_241G1_scaffold_161_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(422..1465)
DNA (1044bp) protein (348aa)
gcp; O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
tRNA N6-adenosine threonylcarbamoyltransferase n=3 Tax=Bifidobacterium RepID=E4R2S2_BIFLM
L1_008_241G1_scaffold_161_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1462..2055)
DNA (594bp) protein (198aa)
Ribosomal-protein-alanine acetyltransferase n=7 Tax=Bifidobacterium longum RepID=C2GXP0_BIFLN
rimI; ribosomal-protein-alanine N-acetyltransferase
Probable ribosomal-protein-alanine N-acetyltransferase {ECO:0000313|EMBL:AAN25251.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_008_241G1_scaffold_161_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2033..2914)
DNA (882bp) protein (294aa)
Glycoprotease family protein n=2 Tax=Bifidobacterium longum RepID=T2I2A8_BIFLN
metal-dependent proteases-like protein
Peptidase M22 {ECO:0000313|EMBL:KEY31366.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_008_241G1_scaffold_161_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2976..3542)
DNA (567bp) protein (189aa)
Uncharacterized protein n=15 Tax=Bifidobacterium RepID=V6XWM7_BIFLN
hypothetical protein
ATPase {ECO:0000313|EMBL:KEY22833.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_241G1_scaffold_161_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3563..4534)
DNA (972bp) protein (324aa)
DNA polymerase III delta subunit n=8 Tax=Bifidobacterium RepID=E8MJ58_BIFL2
DNA polymerase III subunit delta
DNA polymerase III delta subunit {ECO:0000313|EMBL:BAJ66811.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_008_241G1_scaffold_161_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4601..5947)
DNA (1347bp) protein (449aa)
Amidohydrolase n=4 Tax=Bifidobacterium RepID=E5XYZ9_9BIFI
Possible prolidase (X-Pro dipeptidase)/chlorohydrolase {ECO:0000313|EMBL:CCK35116.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
hutI; huti
L1_008_241G1_scaffold_161_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6087..7841)
DNA (1755bp) protein (585aa)
ComEC/Rec2-related protein n=2 Tax=Bifidobacterium longum RepID=D6DD25_BIFLN
ComEC/Rec2-related protein {ECO:0000313|EMBL:CBK70396.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
ComEC/Rec2-related protein
L1_008_241G1_scaffold_161_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7838..8542)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4D7_BIFLO
competence protein ComEA helix-hairpin-helix repeat region
DNA uptake protein {ECO:0000313|EMBL:ACD97775.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_161_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8738..11701)
DNA (2964bp) protein (988aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:CBK70394.1};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DD23_BIFLN
L1_008_241G1_scaffold_161_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11744..12670)
DNA (927bp) protein (309aa)
Solute binding protein of ABC transporter system n=10 Tax=Bifidobacterium RepID=Q8G4D9_BIFLO
solute binding protein of ABC transporter system
Substrate-binding protein of ABC transporter system {ECO:0000313|EMBL:ESV33711.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_008_241G1_scaffold_161_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12685..13635)
DNA (951bp) protein (317aa)
Mg2+ and Co2+ transporter n=16 Tax=Bifidobacterium RepID=B3DRC8_BIFLD
magnesium and cobalt transport protein
Magnesium and cobalt transport protein CorA {ECO:0000313|EMBL:ESV33712.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_008_241G1_scaffold_161_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13750..14595)
DNA (846bp) protein (282aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:CBK70391.1}; EC=5.4.2.1 {ECO:0000313|EMBL:CBK70391.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Fructose-2,6-bisphosphatase n=4 Tax=Bifidobacterium longum RepID=D6DD20_BIFLN
L1_008_241G1_scaffold_161_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14664..15959
DNA (1296bp) protein (432aa)
N6-adenine-specific methylase {ECO:0000313|EMBL:CCK35123.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCK35123.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
N6-adenine-specific methylase n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I2B8_BIFLN
hypothetical protein
L1_008_241G1_scaffold_161_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15987..16391)
DNA (405bp) protein (135aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=Q8G4E3_BIFLO
hypothetical protein
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:ESV33715.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_008_241G1_scaffold_161_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16670..17605
DNA (936bp) protein (312aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=7 Tax=Bifidobacterium longum RepID=S3DML2_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71288.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_241G1_scaffold_161_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17989..18957
DNA (969bp) protein (323aa)
Uncharacterized protein n=8 Tax=Bifidobacterium longum RepID=B3DRC2_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97766.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_161_18
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19000..19569
DNA (570bp) protein (190aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Peptidyl-prolyl cis-trans isomerase n=6 Tax=Bifidobacterium RepID=B3DRC1_BIFLD
L1_008_241G1_scaffold_161_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19671..21995)
DNA (2325bp) protein (775aa)
(P)ppGpp synthetase, RelA/SpoT family n=7 Tax=Bifidobacterium RepID=D6DD10_BIFLN
(P)ppGpp synthetase {ECO:0000313|EMBL:AIW43860.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
GTP pyrophosphokinase
L1_008_241G1_scaffold_161_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22129..22605)
DNA (477bp) protein (159aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=15 Tax=Bifidobacterium RepID=DUT_BIFLD
deoxyuridine 5'-triphosphate nucleotidohydrolase
L1_008_241G1_scaffold_161_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22605..22898)
DNA (294bp) protein (98aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G4E9_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43862.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_241G1_scaffold_161_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23057..24148
DNA (1092bp) protein (364aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=B3DRA7_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97751.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_161_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24158..25405)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=B3DRA6_BIFLD
hypothetical protein
Nucleotide pyrophosphatase {ECO:0000313|EMBL:KHD94880.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L1_008_241G1_scaffold_161_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25677..28406
DNA (2730bp) protein (910aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
DNA topoisomerase plasmid partition protein A n=12 Tax=Bifidobacterium RepID=B3DRA5_BIFLD
DNA topoisomerase IV subunit A
L1_008_241G1_scaffold_161_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28551..29339
DNA (789bp) protein (263aa)
Putative response regulator n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DRA4_BIFLD
response regulator
Putative response regulator {ECO:0000313|EMBL:ACD97748.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_161_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29350..34083)
DNA (4734bp) protein (1578aa)
Lhr-like helicase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DRA3_BIFLD
lhr; Lhr-like helicase
Lhr-like helicase {ECO:0000313|EMBL:ACD97747.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_161_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34099..35088)
DNA (990bp) protein (330aa)
Ribokinase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8APU5_BIFLN
sugar kinase
Sugar kinase {ECO:0000313|EMBL:AIW43866.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_241G1_scaffold_161_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35135..36361)
DNA (1227bp) protein (409aa)
Fucose permease n=7 Tax=Bifidobacterium RepID=B3DRA1_BIFLD
fucP3; fucp3
Fucose permease {ECO:0000313|EMBL:ACD97745.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_161_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36722..38998)
DNA (2277bp) protein (759aa)
DNA topoisomerase plasmid partition protein B n=2 Tax=Bifidobacterium longum RepID=B3DRA0_BIFLD
DNA topoisomerase plasmid partition protein B {ECO:0000313|EMBL:ACD97744.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
parB; DNA topoisomerase plasmid partition protein B
L1_008_241G1_scaffold_161_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39056..40480)
DNA (1425bp) protein (475aa)
RNA polymerase sigma factor SigA n=14 Tax=Bifidobacterium RepID=B3DR99_BIFLD
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Displaying items 1-30 of 41 in total

View Taxonomy