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L1_008_241G1_scaffold_229

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_229_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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665..3820
DNA (3156bp) protein (1052aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=3 Tax=Lachnospiraceae RepID=A7B6J9_RUMGN
L1_008_241G1_scaffold_229_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3826..6297
DNA (2472bp) protein (824aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6J8_RUMGN
L1_008_241G1_scaffold_229_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6308..7264
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6J7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76530.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L1_008_241G1_scaffold_229_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7314..8288
DNA (975bp) protein (325aa)
SpoIID/LytB domain protein n=4 Tax=Clostridiales RepID=A7B6J6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18198.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SpoIID/LytB domain
L1_008_241G1_scaffold_229_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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8331..9047
DNA (717bp) protein (239aa)
Peptidase, M23 family n=4 Tax=Clostridiales RepID=A7B6J5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49572.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Membrane-bound metallopeptidase
L1_008_241G1_scaffold_229_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9164..9412
DNA (249bp) protein (83aa)
GIY-YIG catalytic domain protein n=4 Tax=Clostridiales RepID=A7B6J4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49571.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative O-methyltransferase
L1_008_241G1_scaffold_229_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9439..9981)
DNA (543bp) protein (181aa)
Rubredoxin n=4 Tax=Clostridiales RepID=A7B6J3_RUMGN
Rubredoxin {ECO:0000313|EMBL:EDN76526.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Rubrerythrin
L1_008_241G1_scaffold_229_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10083..10478)
DNA (396bp) protein (132aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TMR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD18194.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Fe2+/Zn2+ uptake regulation proteins
L1_008_241G1_scaffold_229_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10791..11885
DNA (1095bp) protein (365aa)
NlpC/P60 family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUS2_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:CCZ67009.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L1_008_241G1_scaffold_229_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12386..12589
DNA (204bp) protein (68aa)
Hydrid cluster protein-associated redox disulfide domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6I7_RUMGN
Hydrid cluster protein-associated redox disulfide domain protein {ECO:0000313|EMBL:EDN76520.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Domain of unknown function (DUF1858).
L1_008_241G1_scaffold_229_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12656..13375)
DNA (720bp) protein (240aa)
Negative regulator of genetic competence (MecA) n=4 Tax=Clostridiales RepID=A7B6I6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49566.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Negative regulator of genetic competence, sporulation and motility
L1_008_241G1_scaffold_229_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13904..14131
DNA (228bp) protein (76aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6I5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49565.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_241G1_scaffold_229_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14261..16198
DNA (1938bp) protein (646aa)
SH3 domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6I4_RUMGN
SH3 domain protein {ECO:0000313|EMBL:EDN76517.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted glycosyl hydrolase
L1_008_241G1_scaffold_229_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16278..17030)
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B6I3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ67014.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_241G1_scaffold_229_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17035..18396)
DNA (1362bp) protein (454aa)
Glycoside/pentoside/hexuronide transporter n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6I2_RUMGN
Glycoside/pentoside/hexuronide transporter {ECO:0000313|EMBL:EDN76515.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L1_008_241G1_scaffold_229_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18580..19428
DNA (849bp) protein (283aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7B3_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ67016.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
AraC family transcription regulator
L1_008_241G1_scaffold_229_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19409..20344)
DNA (936bp) protein (312aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UDU0_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ67017.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_241G1_scaffold_229_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20527..22452
DNA (1926bp) protein (642aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMS1_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CCZ67018.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L1_008_241G1_scaffold_229_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22528..23250
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67019.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
cell wall hydrolase/autolysin
L1_008_241G1_scaffold_229_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23237..24808
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67020.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Sua5/YciO/YrdC/YwlC family protein
L1_008_241G1_scaffold_229_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24808..25437
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Uracil phosphoribosyltransferase n=4 Tax=Clostridiales RepID=A7B6H6_RUMGN
uracil phosphoribosyltransferase
L1_008_241G1_scaffold_229_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25452..25940
DNA (489bp) protein (163aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5UDU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49558.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_241G1_scaffold_229_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26008..26217
DNA (210bp) protein (70aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TMS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD18182.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SigmaK-factor processing regulatory protein BofA.
L1_008_241G1_scaffold_229_24
unknown

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26253..26477
DNA (225bp) protein (75aa)

This feature has no annotations

L1_008_241G1_scaffold_229_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26456..27388
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67024.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_241G1_scaffold_229_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27385..28662
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67025.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Flp pilus assembly protein, ATPase CpaF
L1_008_241G1_scaffold_229_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28685..29302
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49554.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Flp pilus assembly protein TadB
L1_008_241G1_scaffold_229_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29312..30535
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UDU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67027.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_241G1_scaffold_229_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30556..30759
DNA (204bp) protein (68aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B6G8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76501.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L1_008_241G1_scaffold_229_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30761..31423
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67029.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
Displaying 30 items

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