ggKbase home page

L1_008_241G1_scaffold_259

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_259_1
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

147..2090
DNA (1944bp) protein (648aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00021618}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bacteroides caccae RepID=A5ZFS0_9BACE
L1_008_241G1_scaffold_259_2
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2093..3433
DNA (1341bp) protein (447aa)
Potassium transporter peripheral membrane component n=2 Tax=Bacteroides RepID=A5ZFR9_9BACE
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:EDM21029.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
trkA; potassium transporter peripheral membrane protein
L1_008_241G1_scaffold_259_3
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3468..4919
DNA (1452bp) protein (484aa)
Potassium uptake protein, TrkH family n=3 Tax=Bacteroides RepID=A5ZFR8_9BACE
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EDM21028.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
Trk system K+ uptake protein trkH
L1_008_241G1_scaffold_259_4
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5030..5407
DNA (378bp) protein (126aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=A5ZFR7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21027.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L1_008_241G1_scaffold_259_5
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5523..5873
DNA (351bp) protein (117aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
NADH dehydrogenase subunit A (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A n=3 Tax=Bacteroides RepID=A5ZFR6_9BACE
L1_008_241G1_scaffold_259_6
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5864..6466
DNA (603bp) protein (201aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B n=3 Tax=Bacteroides RepID=A5ZFR5_9BACE
L1_008_241G1_scaffold_259_7
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6493..8085
DNA (1593bp) protein (531aa)
NADH-quinone oxidoreductase subunit C/D {ECO:0000256|HAMAP-Rule:MF_01397}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01397};; NADH dehydrogenase I subunit C/D {ECO:0000256|HAMAP-Rule:MF_01397}; NDH-1 subunit C/D {ECO:0000256|HAMAP-Rule:MF_01397}; NUO3/NUO4 {ECO:0000256|HAMAP-Rule:MF_01397}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
NADH dehydrogenase subunit C/NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VAK7_9BACE
L1_008_241G1_scaffold_259_8
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8118..9194
DNA (1077bp) protein (359aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
NADH-quinone oxidoreductase subunit H n=3 Tax=Bacteroides RepID=A5ZFR3_9BACE
NADH dehydrogenase I subunit H
L1_008_241G1_scaffold_259_9
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9206..9694
DNA (489bp) protein (163aa)
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) (EC:1.6.5.3)
4Fe-4S binding domain protein n=3 Tax=Bacteroides RepID=A5ZFR2_9BACE
NADH-quinone oxidoreductase chain I {ECO:0000313|EMBL:CCZ74498.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
L1_008_241G1_scaffold_259_10
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9698..10210
DNA (513bp) protein (171aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=3 Tax=Bacteroides RepID=A5ZFR1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ74497.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
NADH dehydrogenase I subunit J
L1_008_241G1_scaffold_259_11
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10253..10561
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
NADH-quinone oxidoreductase subunit K n=3 Tax=Bacteroides RepID=A5ZFR0_9BACE
NADH dehydrogenase I subunit K
L1_008_241G1_scaffold_259_12
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10665..12581
DNA (1917bp) protein (639aa)
NADH dehydrogenase subunit L (EC:1.6.5.3)
Proton-translocating NADH-quinone oxidoreductase, chain L n=3 Tax=Bacteroides RepID=A5ZFQ9_9BACE
Proton-translocating NADH-quinone oxidoreductase chain L {ECO:0000313|EMBL:CCZ74495.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
L1_008_241G1_scaffold_259_13
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12594..14078
DNA (1485bp) protein (495aa)
Proton-translocating NADH-quinone oxidoreductase, chain M n=3 Tax=Bacteroides RepID=I9ESV6_9BACE
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EIY23449.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
NADH dehydrogenase I subunit M
L1_008_241G1_scaffold_259_14
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14122..15561
DNA (1440bp) protein (480aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Bacteroides caccae CAG:21 RepID=R5V0P0_9BACE
NADH dehydrogenase I subunit N
L1_008_241G1_scaffold_259_15
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15648..18440)
DNA (2793bp) protein (931aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
PAS domain S-box protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VDN4_9BACE
two-component system sensor histidine kinase
L1_008_241G1_scaffold_259_16
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18661..19872)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9Q2W0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23446.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L1_008_241G1_scaffold_259_17
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19967..22633)
DNA (2667bp) protein (889aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VAJ8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23445.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Outer membrane receptor proteins, mostly Fe transport
L1_008_241G1_scaffold_259_18
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22964..23860)
DNA (897bp) protein (299aa)
Transcriptional regulator, AraC family n=3 Tax=Bacteroides RepID=A5ZFQ3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23444.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
transcriptional regulator
L1_008_241G1_scaffold_259_19
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23899..25230)
DNA (1332bp) protein (444aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=3 Tax=Bacteroides RepID=A5ZFQ2_9BACE
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EDM21012.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
membrane transport protein
L1_008_241G1_scaffold_259_20
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25279..26280)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZFQ1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21011.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
ABC transporter ATP-binding protein
L1_008_241G1_scaffold_259_21
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26305..27168)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Bacteroides caccae RepID=A5ZFQ0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23441.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
ABC-type multidrug transport system, ATPase component
L1_008_241G1_scaffold_259_22
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27184..27387)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZFP9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21009.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
L1_008_241G1_scaffold_259_23
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27580..28470
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9ESU9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23439.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Predicted permeases
Displaying 23 items

View Taxonomy