ggKbase home page

L1_008_241G1_scaffold_369

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_369_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5..1063)
DNA (1059bp) protein (353aa)
Glyceraldehyde 3-phosphate dehydrogenase {ECO:0000313|EMBL:BAR00271.1}; Glyceraldehyde-3-phosphate dehydrogenase, type I {ECO:0000313|EMBL:EFE88234.1}; EC=1.2.1.- {ECO:0000313|EMBL:EFE88234.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
GapA n=6 Tax=Bifidobacterium RepID=E4R292_BIFLM
Glyceraldehyde 3-phosphate dehydrogenase
L1_008_241G1_scaffold_369_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1298..2023)
DNA (726bp) protein (242aa)
Thiamine diphosphokinase n=2 Tax=Bifidobacterium breve RepID=D4BS22_BIFBR
Thiamin pyrophosphokinase
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EPD75371.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2193..2369
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DYI5_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI84951.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
speE; spee
L1_008_241G1_scaffold_369_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2562..3368
DNA (807bp) protein (269aa)
translation initiation factor IF-3 n=1 Tax=Bifidobacterium breve RepID=UPI0003755512
Bacterial Protein Translation Initiation Factor 3 (IF-3)
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3349..3543
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=5 Tax=Bifidobacterium breve RepID=F6C8P3_BIFBA
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_008_241G1_scaffold_369_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3595..3978
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BS26_BIFBR
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_241G1_scaffold_369_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4049..5203
DNA (1155bp) protein (385aa)
Glycerate kinase {ECO:0000313|EMBL:EFE88240.1}; EC=2.7.1.31 {ECO:0000313|EMBL:EFE88240.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Glycerate kinase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BS27_BIFBR
Glycerate kinase
L1_008_241G1_scaffold_369_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5239..6168
DNA (930bp) protein (310aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C8P8_BIFBA
Integrase/recombinase (XerD/RipX family)
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_241G1_scaffold_369_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6333..7232
DNA (900bp) protein (300aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=S2ZZB6_BIFBR
Chromosome partitioning protein parA
Uncharacterized protein {ECO:0000313|EMBL:EPD75377.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7232..8083
DNA (852bp) protein (284aa)
ScpA/B protein n=3 Tax=Bifidobacterium breve RepID=D4BS30_BIFBR
Segregation and condensation protein ScpA
Segregation and condensation protein ScpA {ECO:0000313|EMBL:AHJ21392.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_241G1_scaffold_369_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8096..8770
DNA (675bp) protein (225aa)
Segregation and condensation protein B n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0N9_BIFBR
Segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_241G1_scaffold_369_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8903..9739
DNA (837bp) protein (279aa)
Phosphohydrolase (MutT/nudix family protein) n=4 Tax=Bifidobacterium breve RepID=F9Y1L1_BIFBU
Phosphohydrolase (MutT/nudix family protein)
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFE88245.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_241G1_scaffold_369_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9792..11072
DNA (1281bp) protein (427aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Quinolinate synthase A n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZG66_BIFBR
Quinolinate synthetase A
L1_008_241G1_scaffold_369_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11129..12733
DNA (1605bp) protein (535aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZZC0_BIFBR
L1_008_241G1_scaffold_369_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12737..13630
DNA (894bp) protein (298aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=2 Tax=Bifidobacterium breve RepID=D4BS35_BIFBR
Nicotinate-nucleotide pyrophosphorylase
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EPD75383.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13633..14931
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AGD9_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75384.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Cysteine desulfurase
L1_008_241G1_scaffold_369_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15029..16378
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZLZ1_BIFBR
putative membrane spanning protein, MFS member
Putative membrane spanning protein, MFS member {ECO:0000313|EMBL:AHJ19585.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_008_241G1_scaffold_369_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16483..19605)
DNA (3123bp) protein (1041aa)
ABC transporter permease n=1 Tax=Bifidobacterium breve RepID=UPI00031A7566
putative membrane spanning protein, ABC-type permease
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFE88251.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_241G1_scaffold_369_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19602..20135)
DNA (534bp) protein (178aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=S2ZZC5_BIFBR
ATP-binding protein of ABC transporter system
Uncharacterized protein {ECO:0000313|EMBL:EPD75387.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20379..20984)
DNA (606bp) protein (202aa)
Transcriptional regulator, PadR-like family n=5 Tax=Bifidobacterium RepID=D6ZUW5_BIFLJ
Transcriptional regulator, padR type
Transcriptional regulator, PadR family {ECO:0000313|EMBL:AEF28096.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_241G1_scaffold_369_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21410..23212
DNA (1803bp) protein (601aa)
GTP-binding protein TypA n=2 Tax=Bifidobacterium breve RepID=D4BS41_BIFBR
GTP-binding protein TypA/BipA
GTP-binding protein {ECO:0000313|EMBL:BAR00251.1}; GTP-binding protein TypA {ECO:0000313|EMBL:EFE88254.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_241G1_scaffold_369_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23262..23786
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZLZ5_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75390.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
putative membrane spanning protein
L1_008_241G1_scaffold_369_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23854..24825
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZG77_BIFBR
Prephenate dehydratase
Chorismate mutase {ECO:0000313|EMBL:KEY26581.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
L1_008_241G1_scaffold_369_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24819..25835
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZZD0_BIFBR
Prephenate dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:EPD75392.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25915..26178
DNA (264bp) protein (88aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=H3L0Q3_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75393.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_241G1_scaffold_369_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26431..29289)
DNA (2859bp) protein (953aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AGE7_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75394.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
efflux ABC transporter permease
L1_008_241G1_scaffold_369_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29286..30098)
DNA (813bp) protein (271aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium breve RepID=F6C8R7_BIFBA
ATP-binding protein of ABC transporter system
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AEF26424.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_241G1_scaffold_369_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30260..31279
DNA (1020bp) protein (340aa)
Tyrosine recombinase XerC n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2C383_BIFBR
Integrase/recombinase
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_241G1_scaffold_369_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31533..31667
DNA (135bp) protein (45aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUV8_BIFLJ
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEY31436.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Displaying 29 items

View Taxonomy