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L1_008_241G1_scaffold_529

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_529_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..2856)
DNA (2856bp) protein (952aa)
Translation initiation factor IF-2 n=2 Tax=Bifidobacterium longum RepID=E8MVQ6_BIFL1
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
translation initiation factor IF-2
L1_008_241G1_scaffold_529_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3126..4193)
DNA (1068bp) protein (356aa)
NusA antitermination factor n=6 Tax=Bifidobacterium RepID=D6ZW93_BIFLJ
nusA; NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_241G1_scaffold_529_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4401..5129
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=S3EJ15_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44249.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_241G1_scaffold_529_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5170..6213)
DNA (1044bp) protein (348aa)
RbsR-type transcription regulator/ribose operon repressor n=6 Tax=Bifidobacterium longum RepID=B3DQE7_BIFLD
LacI family transcription regulator
Regulatory protein, LacI {ECO:0000313|EMBL:ADH01151.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L1_008_241G1_scaffold_529_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6746..8314)
DNA (1569bp) protein (523aa)
Exo-alpha-(1->6)-L-arabinofuranosidase n=11 Tax=Bifidobacterium RepID=16ABF_BIFLN
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:AIW44251.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
alpha-L-arabinosidase
L1_008_241G1_scaffold_529_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9124..9924)
DNA (801bp) protein (267aa)
Transglutaminase-like cysteine protease n=14 Tax=Bifidobacterium RepID=B3DQE5_BIFLD
hypothetical protein
Transglutaminase-like superfamily protein {ECO:0000313|EMBL:CCK35640.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L1_008_241G1_scaffold_529_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10131..12311)
DNA (2181bp) protein (727aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GV82_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEI80934.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L1_008_241G1_scaffold_529_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12533..13444
DNA (912bp) protein (304aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
tRNA pseudouridine synthase A n=12 Tax=Bifidobacterium longum RepID=TRUA_BIFLD
tRNA pseudouridine synthase A
L1_008_241G1_scaffold_529_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13526..14068)
DNA (543bp) protein (181aa)
50S ribosomal protein L17 n=12 Tax=Bifidobacterium RepID=D6ZWA1_BIFLJ
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_008_241G1_scaffold_529_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14168..15163)
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
DNA-directed RNA polymerase subunit alpha n=18 Tax=Bifidobacterium RepID=RPOA_BIFLO
DNA-directed RNA polymerase alpha subunit
L1_008_241G1_scaffold_529_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(15244..15642)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=26 Tax=Bifidobacterium RepID=RS11_BIFLD
rpsK; SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_008_241G1_scaffold_529_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(15730..15906)
DNA (177bp) protein (59aa)
30S ribosomal protein S13 n=5 Tax=Bifidobacterium breve RepID=F9XYA2_BIFBU
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Displaying 12 items

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