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L1_008_241G1_scaffold_558

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_241G1_scaffold_558_1
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..1485)
DNA (1485bp) protein (495aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=2 Tax=Bifidobacterium RepID=E5XXS3_9BIFI
L1_008_241G1_scaffold_558_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1618..2088)
DNA (471bp) protein (157aa)
Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives n=9 Tax=Bifidobacterium RepID=D6DAZ3_BIFLN
hypothetical protein
Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives {ECO:0000313|EMBL:CBK71346.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_008_241G1_scaffold_558_3
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2085..3323)
DNA (1239bp) protein (413aa)
DNA replication and repair protein RecF n=8 Tax=Bifidobacterium RepID=E4R1N2_BIFLM
recombination protein RecF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_241G1_scaffold_558_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3351..4475)
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
DNA polymerase III subunit beta n=17 Tax=Bifidobacterium RepID=B3DP21_BIFLD
DNA polymerase III subunit beta
L1_008_241G1_scaffold_558_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4580..5125)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G6K1_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24461.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_008_241G1_scaffold_558_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5211..6713)
DNA (1503bp) protein (501aa)
Chromosomal replication initiator protein DnaA n=16 Tax=Bifidobacterium RepID=DNAA_BIFLD
dnaA; dnaa
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_241G1_scaffold_558_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


7032..7166
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=14 Tax=Bifidobacterium RepID=RL34_BIFLD
50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_008_241G1_scaffold_558_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7199..7558
DNA (360bp) protein (120aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Ribonuclease P protein component n=17 Tax=Bifidobacterium RepID=RNPA_BIFLD
ribonuclease P
L1_008_241G1_scaffold_558_9
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7869..8876
DNA (1008bp) protein (336aa)
Membrane protein insertase YidC n=12 Tax=Bifidobacterium RepID=YIDC_BIFLO
yidC2; preprotein translocase subunit
YidC/Oxa1 family membrane protein insertase {ECO:0000313|EMBL:EFV37637.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L1_008_241G1_scaffold_558_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9000..9533
DNA (534bp) protein (178aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=Q8G6J5_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY30885.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_008_241G1_scaffold_558_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9685..10350
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Ribosomal RNA small subunit methyltransferase G n=12 Tax=Bifidobacterium RepID=RSMG_BIFLD
glucose-inhibited division protein
L1_008_241G1_scaffold_558_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10601..11572
DNA (972bp) protein (324aa)
ATPase for chromosome partitioning n=9 Tax=Bifidobacterium longum RepID=B3DP28_BIFLD
chromosome partitioning protein ParA
ATPase for chromosome partitioning {ECO:0000313|EMBL:ACD98887.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_241G1_scaffold_558_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11572..12933
DNA (1362bp) protein (454aa)
Chromosome partitioning protein ParB n=10 Tax=Bifidobacterium RepID=F8APE1_BIFLN
chromosome partitioning protein ParB
ParB-like protein {ECO:0000313|EMBL:EEQ54715.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_241G1_scaffold_558_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13229..14401
DNA (1173bp) protein (391aa)
Transposase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MWI7_BIFL1
transposase
Transposase {ECO:0000313|EMBL:BAJ72131.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_241G1_scaffold_558_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14636..15151)
DNA (516bp) protein (172aa)
ABC transporter, permease protein n=1 Tax=Bifidobacterium longum subsp. longum 2-2B RepID=I3AVY1_BIFLN
ABC transporter permease {ECO:0000313|EMBL:KEY24059.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
ABC transporter permease
Displaying 15 items

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