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L1_008_364G1_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_34_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(73..387)
DNA (315bp) protein (105aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=U4B4N3_CLODI
putative conjugative transposon protein DUF961family Tn916-like, CTn6-Orf24
Uncharacterized protein {ECO:0000313|EMBL:EDP15495.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L1_008_364G1_scaffold_34_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1001..2866
DNA (1866bp) protein (622aa)
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=2 Tax=Clostridium RepID=B6FJ58_9CLOT
Asparagine synthetase {ECO:0000313|EMBL:CDC22485.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_364G1_scaffold_34_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2889..4067
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNQ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22484.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Bacterial cell division membrane protein
L1_008_364G1_scaffold_34_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4157..4996
DNA (840bp) protein (280aa)
EDD domain protein, DegV family n=2 Tax=Clostridium RepID=B6FJ56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22483.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
EDD domain protein, DegV family
L1_008_364G1_scaffold_34_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5019..5267
DNA (249bp) protein (83aa)
Gram-positive signal peptide protein, YSIRK family n=2 Tax=Clostridium RepID=B6FJ55_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22482.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_364G1_scaffold_34_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5475..5912
DNA (438bp) protein (146aa)
Protein MraZ n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVG5_9CLOT
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
MraZ protein
L1_008_364G1_scaffold_34_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5939..6874
DNA (936bp) protein (312aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=2 Tax=Clostridium RepID=B6FJ53_9CLOT
L1_008_364G1_scaffold_34_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6938..7414
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJ52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22479.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_364G1_scaffold_34_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7422..9308
DNA (1887bp) protein (629aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ51_9CLOT
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EEA83943.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Cell division protein FtsI/penicillin-binding protein 2
L1_008_364G1_scaffold_34_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9372..11105
DNA (1734bp) protein (578aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ50_9CLOT
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EEA83942.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_364G1_scaffold_34_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11160..12116
DNA (957bp) protein (319aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=2 Tax=Clostridium RepID=B6FJ49_9CLOT
L1_008_364G1_scaffold_34_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12137..13489
DNA (1353bp) protein (451aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ48_9CLOT
L1_008_364G1_scaffold_34_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13508..14593
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFY8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22475.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Bacterial cell division membrane protein
L1_008_364G1_scaffold_34_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14618..15400
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22474.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_364G1_scaffold_34_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15537..16736
DNA (1200bp) protein (400aa)
Cell division protein FtsZ n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDT2_9CLOT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell division protein FtsZ
L1_008_364G1_scaffold_34_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16904..17686
DNA (783bp) protein (261aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QKI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22472.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Sporulation factor SpoIIGA.
L1_008_364G1_scaffold_34_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17698..18441
DNA (744bp) protein (248aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=B6FJ42_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
RNA polymerase, sigma 29 subunit, SigE
L1_008_364G1_scaffold_34_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18509..20116
DNA (1608bp) protein (536aa)
Metallo-beta-lactamase domain protein n=2 Tax=Clostridium RepID=B6FJ41_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEA83933.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L1_008_364G1_scaffold_34_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20249..21028
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=B6FJ40_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
RNA polymerase, sigma subunit, RpsG/SigG
L1_008_364G1_scaffold_34_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21167..21829
DNA (663bp) protein (221aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Putative phosphoglycolate phosphatase, bacterial n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ39_9CLOT
Putative phosphoglycolate phosphatase, bacterial {ECO:0000313|EMBL:EEA83931.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_364G1_scaffold_34_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21843..22106
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJ38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22467.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_364G1_scaffold_34_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22128..22559)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83929.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_364G1_scaffold_34_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22703..23278
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=2 Tax=Clostridium RepID=B6FJ36_9CLOT
L1_008_364G1_scaffold_34_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23291..26629
DNA (3339bp) protein (1113aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNN2_9CLOT
L1_008_364G1_scaffold_34_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26676..27710
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ34_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83926.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PPIC-type PPIASE domain.
L1_008_364G1_scaffold_34_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27778..28563
DNA (786bp) protein (262aa)
Metal cation transporter, ZIP family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ33_9CLOT
Metal cation transporter, ZIP family {ECO:0000313|EMBL:EEA83925.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
zinc/iron permease
L1_008_364G1_scaffold_34_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28645..29451)
DNA (807bp) protein (269aa)
Delta-lactam-biosynthetic de-N-acetylase n=2 Tax=Clostridium RepID=B6FJ32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22461.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
delta-lactam-biosynthetic de-N-acetylase
L1_008_364G1_scaffold_34_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29592..30041)
DNA (450bp) protein (150aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJ30_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22460.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_364G1_scaffold_34_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30161..31189)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNM7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22459.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_364G1_scaffold_34_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31399..32808
DNA (1410bp) protein (470aa)
Amidophosphoribosyltransferase {ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|PIRNR:PIRNR000485}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=2 Tax=Clostridium RepID=B6FJ28_9CLOT
Displaying items 1-30 of 117 in total

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