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L1_008_364G1_scaffold_49

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_49_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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362..2044
DNA (1683bp) protein (561aa)
Oligo-1 6-glucosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BLB6_9FIRM
Oligo-1 6-glucosidase {ECO:0000313|EMBL:CDA54147.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glycosidases
L1_008_364G1_scaffold_49_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2233..3870
DNA (1638bp) protein (546aa)
Na/Pi-cotransporter n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWA3_9FIRM
Na/Pi-cotransporter
Na/Pi-cotransporter {ECO:0000313|EMBL:CBL11643.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_49_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3890..4735
DNA (846bp) protein (282aa)
Predicted membrane protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQK0_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL09152.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_49_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4879..5871
DNA (993bp) protein (331aa)
Predicted xylanase/chitin deacetylase n=4 Tax=Roseburia RepID=D4KQK1_9FIRM
Predicted xylanase/chitin deacetylase
Predicted xylanase/chitin deacetylase {ECO:0000313|EMBL:CDA54155.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5896..6765
DNA (870bp) protein (290aa)
Integral membrane protein CcmA involved in cell shape determination n=3 Tax=Roseburia RepID=D4KQK2_9FIRM
Integral membrane protein CcmA involved in cell shape determination
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:CDA54156.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6772..7467
DNA (696bp) protein (232aa)
uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Uridylate kinase n=4 Tax=Roseburia RepID=D4KQK3_9FIRM
L1_008_364G1_scaffold_49_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7499..8053
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=4 Tax=Roseburia RepID=D4KQK4_9FIRM
ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_49_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8091..8882
DNA (792bp) protein (264aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=4 Tax=Roseburia RepID=D4KWA9_9FIRM
L1_008_364G1_scaffold_49_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8913..9719
DNA (807bp) protein (269aa)
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:CBL11650.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phosphatidate cytidylyltransferase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWB0_9FIRM
L1_008_364G1_scaffold_49_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9888..11033
DNA (1146bp) protein (382aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=3 Tax=Roseburia intestinalis RepID=D4KQK7_9FIRM
L1_008_364G1_scaffold_49_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11062..12093
DNA (1032bp) protein (344aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
RIP metalloprotease RseP n=3 Tax=Roseburia intestinalis RepID=D4KQK8_9FIRM
RIP metalloprotease RseP
L1_008_364G1_scaffold_49_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12107..13156
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B5D0_9FIRM
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L1_008_364G1_scaffold_49_13
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13221..17717
DNA (4497bp) protein (1499aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA polymerase III polC-type n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HL93_9FIRM
DNA polymerase III subunit alpha
L1_008_364G1_scaffold_49_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17792..18823)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6AXH9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09163.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_49_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19015..20145
DNA (1131bp) protein (377aa)
Prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=4 Tax=Roseburia RepID=D4KQL2_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CDA55734.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20199..21494
DNA (1296bp) protein (432aa)
Predicted ATPase (AAA+ superfamily) n=3 Tax=Roseburia intestinalis RepID=D4KQL3_9FIRM
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CBL11657.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_49_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21524..23056
DNA (1533bp) protein (511aa)
Exopolyphosphatase n=4 Tax=Roseburia RepID=D4KQL4_9FIRM
Exopolyphosphatase
Exopolyphosphatase {ECO:0000313|EMBL:CDA55732.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23069..25207
DNA (2139bp) protein (713aa)
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Polyphosphate kinase n=4 Tax=Roseburia RepID=D4KQL5_9FIRM
L1_008_364G1_scaffold_49_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25240..26052
DNA (813bp) protein (271aa)
HAD-superfamily hydrolase, subfamily IIB n=3 Tax=Roseburia RepID=D4KQL6_9FIRM
HAD-superfamily hydrolase, subfamily IIB
HAD-superfamily hydrolase subfamily IIB {ECO:0000313|EMBL:CDA55730.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26085..26954)
DNA (870bp) protein (290aa)
Predicted metal-dependent phosphoesterases (PHP family) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQL7_9FIRM
Predicted metal-dependent phosphoesterases (PHP family)
Predicted metal-dependent phosphoesterases (PHP family) {ECO:0000313|EMBL:CBL09169.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_49_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27152..27595
DNA (444bp) protein (148aa)
Chemotaxis signal transduction protein n=4 Tax=Roseburia RepID=D4KWC2_9FIRM
Chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:CDA55728.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27637..29337
DNA (1701bp) protein (567aa)
Methyl-accepting chemotaxis protein n=2 Tax=Roseburia RepID=D4KQL9_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA55727.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Methyl-accepting chemotaxis protein
L1_008_364G1_scaffold_49_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29651..30148
DNA (498bp) protein (166aa)
Translation initiation factor IF-3 n=4 Tax=Roseburia RepID=D4KQM0_9FIRM
bacterial translation initiation factor 3 (bIF-3)
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_49_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30168..30365
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=4 Tax=Roseburia RepID=D4KQM1_9FIRM
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_49_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30391..30747
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=4 Tax=Roseburia RepID=D4KQM2_9FIRM
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_364G1_scaffold_49_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30840..31562
DNA (723bp) protein (241aa)
Histidinol phosphatase and related hydrolases of the PHP family n=2 Tax=Roseburia RepID=D4KWC7_9FIRM
Histidinol phosphatase and related hydrolases of the PHP family
Histidinol phosphatase and related hydrolases of the PHP family {ECO:0000313|EMBL:CBL11667.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_49_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31559..32392)
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=3 Tax=Roseburia intestinalis RepID=D4KQM4_9FIRM
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CBL09176.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_49_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32625..33641
DNA (1017bp) protein (339aa)
UDP-glucose-4-epimerase (EC:5.1.3.2)
UDP-glucose-4-epimerase {ECO:0000313|EMBL:CBL09177.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CBL09177.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
UDP-glucose-4-epimerase n=3 Tax=Roseburia RepID=D4KQM5_9FIRM
L1_008_364G1_scaffold_49_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33899..34984
DNA (1086bp) protein (362aa)
Dioxygenases related to 2-nitropropane dioxygenase n=2 Tax=Roseburia RepID=D4KQM6_9FIRM
Dioxygenases related to 2-nitropropane dioxygenase
Dioxygenases related to 2-nitropropane dioxygenase {ECO:0000313|EMBL:CDA55720.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_49_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35566..36033
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=4 Tax=Roseburia RepID=D4KQM8_9FIRM
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Displaying items 1-30 of 93 in total

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