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L1_008_364G1_scaffold_57

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_57_1
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..303)
DNA (303bp) protein (101aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
Phospholipase D domain protein {ECO:0000313|EMBL:EEG36494.1}; EC=3.1.-.- {ECO:0000313|EMBL:EEG36494.1};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLV6_9FIRM
L1_008_364G1_scaffold_57_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(576..944)
DNA (369bp) protein (123aa)
EMAP domain n=2 Tax=Roseburia intestinalis RepID=D4KLV5_9FIRM
EMAP domain
EMAP domain {ECO:0000313|EMBL:CBL07857.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_57_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1034..1555)
DNA (522bp) protein (174aa)
Macro domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN3_9FIRM
Macro domain protein {ECO:0000313|EMBL:EEU99720.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
RNA-directed RNA polymerase
L1_008_364G1_scaffold_57_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1559..1777)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99721.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_57_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1764..2237)
DNA (474bp) protein (158aa)
UPF0178 protein ROSINTL182_08387 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN5_9FIRM
UPF0178 protein ROSINTL182_08387 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_57_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2259..2630)
DNA (372bp) protein (124aa)
Glyoxalase family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN6_9FIRM
Glyoxalase family protein {ECO:0000313|EMBL:EEU99723.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lactoylglutathione lyase and related lyases
L1_008_364G1_scaffold_57_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2733..2927)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99724.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_57_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2927..3319)
DNA (393bp) protein (131aa)
Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN8_9FIRM
Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:EEU99725.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_57_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3484..5376)
DNA (1893bp) protein (631aa)
Type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family {ECO:0000313|EMBL:EEU99726.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EEU99726.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
putative type II endonuclease-methyltransferase fusion protein (EC:2.1.1.- 3.1.21.-)
Type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEN9_9FIRM
L1_008_364G1_scaffold_57_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5768..7057)
DNA (1290bp) protein (430aa)
Transposase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEP0_9FIRM
Transposase {ECO:0000313|EMBL:EEU99727.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transposase and inactivated derivatives
L1_008_364G1_scaffold_57_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7241..8224)
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GEP1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU99728.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_364G1_scaffold_57_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8271..8927)
DNA (657bp) protein (219aa)
SrtB family Sortase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GBW4_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:EEU99729.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_57_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9060..9413)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99730.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_364G1_scaffold_57_14
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9582..9677)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6J385_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB52186.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
L1_008_364G1_scaffold_57_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10080..13724)
DNA (3645bp) protein (1215aa)
IgA Peptidase M64./Fibronectin type III domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLU6_9FIRM
IgA Peptidase M64./Fibronectin type III domain.
IgA Peptidase M64./Fibronectin type III domain {ECO:0000313|EMBL:CBL07848.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_57_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13953..14852)
DNA (900bp) protein (300aa)
Retron-type reverse transcriptase n=5 Tax=Roseburia intestinalis RepID=D4L313_9FIRM
Retron-type reverse transcriptase
Retron-type reverse transcriptase {ECO:0000313|EMBL:CBL14003.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_57_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14929..15192)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02774.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_57_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15320..16204)
DNA (885bp) protein (295aa)
Predicted transcriptional regulators n=3 Tax=root RepID=D4KLT5_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL07837.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_57_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16457..18394)
DNA (1938bp) protein (646aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5P4_9FIRM
L1_008_364G1_scaffold_57_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18453..18932)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5P5_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
transcription elongation factor GreA
L1_008_364G1_scaffold_57_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19005..19544)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KLT2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07834.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_57_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19654..20646)
DNA (993bp) protein (331aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
tRNA-dihydrouridine synthase n=2 Tax=Roseburia RepID=D4KLT1_9FIRM
tRNA-U20-dihydrouridine synthase
L1_008_364G1_scaffold_57_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20719..21510)
DNA (792bp) protein (264aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Type III pantothenate kinase n=4 Tax=Roseburia RepID=D4KLT0_9FIRM
L1_008_364G1_scaffold_57_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21532..21873)
DNA (342bp) protein (114aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7G5P9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13608.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_57_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21866..22843)
DNA (978bp) protein (326aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA, biotin-[acetyl-CoA-carboxylase] ligase region n=3 Tax=Roseburia RepID=D4L1W7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_57_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22923..23912)
DNA (990bp) protein (330aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=2 Tax=Roseburia RepID=C7G5Q1_9FIRM
L1_008_364G1_scaffold_57_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24013..24945)
DNA (933bp) protein (311aa)
Membrane protease subunits, stomatin/prohibitin homologs n=4 Tax=Roseburia RepID=D4KLS8_9FIRM
Membrane protease subunits, stomatin/prohibitin homologs
Membrane protease subunits, stomatin/prohibitin homologs {ECO:0000313|EMBL:CBL13604.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_364G1_scaffold_57_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25045..25884)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02785.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Uncharacterised protein family (UPF0104).
L1_008_364G1_scaffold_57_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26086..27483)
DNA (1398bp) protein (466aa)
Predicted Fe-S oxidoreductases n=3 Tax=Roseburia RepID=D4KLS6_9FIRM
Predicted Fe-S oxidoreductases
Radical SAM domain protein {ECO:0000313|EMBL:CDA55888.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_57_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27819..28787
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1W2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13602.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 100 in total

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