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L1_008_364G1_scaffold_148

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_148_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

242..595
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B0F3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56655.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(688..1128)
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPL4_9FIRM
Protein of unknown function (DUF2752).
Uncharacterized protein {ECO:0000313|EMBL:CBL08816.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_148_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1383..2144
DNA (762bp) protein (254aa)
Predicted integral membrane protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPL3_9FIRM
Predicted integral membrane protein
Predicted integral membrane protein {ECO:0000313|EMBL:CDA56652.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2213..3619
DNA (1407bp) protein (469aa)
Putative permease n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GF33_9FIRM
uracil-xanthine permease
Putative permease {ECO:0000313|EMBL:EEU99583.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_364G1_scaffold_148_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3806..4522)
DNA (717bp) protein (239aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GF32_9FIRM
Putative integral membrane protein {ECO:0000313|EMBL:CDA56642.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted membrane protein (DUF2154).
L1_008_364G1_scaffold_148_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4519..4977)
DNA (459bp) protein (153aa)
Response regulator of the LytR/AlgR family n=3 Tax=Roseburia RepID=D4L395_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDA56640.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5086..5946)
DNA (861bp) protein (287aa)
ATPases involved in chromosome partitioning n=3 Tax=Roseburia RepID=D4KPK9_9FIRM
ATPases involved in chromosome partitioning
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CDA56639.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6007..7119)
DNA (1113bp) protein (371aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BTQ3_9FIRM
L1_008_364G1_scaffold_148_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7267..7863)
DNA (597bp) protein (199aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GF28_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56498.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7860..9053)
DNA (1194bp) protein (398aa)
Beta-lactamase class C and other penicillin binding proteins n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBM1_9FIRM
Beta-lactamase class C and other penicillin binding proteins {ECO:0000313|EMBL:CDA56496.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Beta-lactamase class C and other penicillin binding proteins
L1_008_364G1_scaffold_148_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9087..10244)
DNA (1158bp) protein (386aa)
Alanyl-tRNA synthetase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPK5_9FIRM
Alanyl-tRNA synthetase
Alanyl-tRNA synthetase {ECO:0000313|EMBL:CBL08807.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_148_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10260..10649)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AX63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56493.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_364G1_scaffold_148_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11163..11963)
DNA (801bp) protein (267aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Shikimate kinase n=3 Tax=Roseburia RepID=D4KPK2_9FIRM
L1_008_364G1_scaffold_148_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12157..13188)
DNA (1032bp) protein (344aa)
TRAP transporter solute receptor, DctP family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8S9_9FIRM
TRAP transporter solute receptor, DctP family {ECO:0000313|EMBL:EEV01803.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_364G1_scaffold_148_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13202..14494)
DNA (1293bp) protein (431aa)
TRAP dicarboxylate transporter DctM subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BTB4_9FIRM
TRAP dicarboxylate transporter DctM subunit {ECO:0000313|EMBL:CDA56487.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
TRAP transporter, DctM subunit
L1_008_364G1_scaffold_148_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14495..15100)
DNA (606bp) protein (202aa)
TRAP-type C4-dicarboxylate transport system small permease component n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBI3_9FIRM
TRAP-type C4-dicarboxylate transport system small permease component {ECO:0000313|EMBL:CDA56486.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
TRAP-type C4-dicarboxylate transport system, small permease component
L1_008_364G1_scaffold_148_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15303..16067)
DNA (765bp) protein (255aa)
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000313|EMBL:CBL08801.1};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
3-dehydroquinate dehydratase n=2 Tax=Roseburia intestinalis RepID=D4KPJ9_9FIRM
L1_008_364G1_scaffold_148_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16090..17319)
DNA (1230bp) protein (410aa)
Major Facilitator Superfamily n=4 Tax=Roseburia RepID=D4KPJ8_9FIRM
Major Facilitator Superfamily.
Major Facilitator Superfamily {ECO:0000313|EMBL:CDA56484.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17398..18273)
DNA (876bp) protein (292aa)
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Shikimate dehydrogenase n=3 Tax=Roseburia intestinalis RepID=D4KPJ7_9FIRM
L1_008_364G1_scaffold_148_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18528..19409
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=4 Tax=Roseburia RepID=D4KPJ6_9FIRM
transcriptional regulator, LysR family
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDA56482.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19468..20349)
DNA (882bp) protein (294aa)
Transcriptional regulator LysR family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBH7_9FIRM
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDA56481.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
transcriptional regulator, LysR family
L1_008_364G1_scaffold_148_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20700..22700
DNA (2001bp) protein (667aa)
NADH:flavin oxidoreductases, Old Yellow Enzyme family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L376_9FIRM
NADH:flavin oxidoreductases, Old Yellow Enzyme family {ECO:0000313|EMBL:CBL14066.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L1_008_364G1_scaffold_148_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23066..23935)
DNA (870bp) protein (290aa)
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Shikimate dehydrogenase n=3 Tax=Roseburia intestinalis RepID=D4KPJ3_9FIRM
L1_008_364G1_scaffold_148_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24158..24595
DNA (438bp) protein (146aa)
Acetyltransferases n=3 Tax=Roseburia intestinalis RepID=D4KPJ2_9FIRM
Acetyltransferases
Acetyltransferases {ECO:0000313|EMBL:CBL08794.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_148_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24765..26747)
DNA (1983bp) protein (661aa)
Myosin-crossreactive antigen n=2 Tax=Roseburia RepID=D4KPJ1_9FIRM
Myosin-crossreactive antigen
Myosin-crossreactive antigen {ECO:0000313|EMBL:CBL08793.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_364G1_scaffold_148_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26961..27521)
DNA (561bp) protein (187aa)
Transcriptional regulator n=3 Tax=Roseburia RepID=D4KPJ0_9FIRM
transcriptional regulator
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:EEV01790.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_364G1_scaffold_148_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27862..29376)
DNA (1515bp) protein (505aa)
Alpha-L-arabinofuranosidase (EC:3.2.1.55)
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:CBL08791.1}; EC=3.2.1.55 {ECO:0000313|EMBL:CBL08791.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Alpha-L-arabinofuranosidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPI9_9FIRM
L1_008_364G1_scaffold_148_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29404..30267)
DNA (864bp) protein (288aa)
ABC transporter, permease protein n=2 Tax=Roseburia RepID=C7G8R4_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L-arabinose transport system permease protein AraQ {ECO:0000313|EMBL:CDA53903.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30269..31162)
DNA (894bp) protein (298aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=3 Tax=Roseburia RepID=D4L367_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53902.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_364G1_scaffold_148_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31246..32643)
DNA (1398bp) protein (466aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B4L2_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53901.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Displaying items 1-30 of 59 in total

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