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L1_008_364G1_scaffold_308

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_308_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..527)
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JVU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD20258.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Bacterial cell division membrane protein
L1_008_364G1_scaffold_308_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(524..733)
DNA (210bp) protein (70aa)
Cell division topological specificity factor MinE n=3 Tax=Lachnospiraceae RepID=V8BYQ9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48418.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Septum formation topological specificity factor MinE.
L1_008_364G1_scaffold_308_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(745..1536)
DNA (792bp) protein (264aa)
Site-determining protein n=3 Tax=Lachnospiraceae RepID=A7B2W8_RUMGN
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
septum site-determining protein MinD
L1_008_364G1_scaffold_308_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1574..2212)
DNA (639bp) protein (213aa)
Probable septum site-determining protein MinC n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U607_9FIRM
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Septum formation inhibitor
L1_008_364G1_scaffold_308_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2230..5085)
DNA (2856bp) protein (952aa)
Penicillin-binding protein, transpeptidase domain protein n=3 Tax=Lachnospiraceae RepID=A7B2W6_RUMGN
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EDN77739.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
pbpA1; penicillin-binding protein PbpA1
L1_008_364G1_scaffold_308_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5078..5611)
DNA (534bp) protein (178aa)
Rod shape-determining protein MreD n=4 Tax=Clostridiales RepID=A7B2W5_RUMGN
Rod shape-determining protein MreD {ECO:0000313|EMBL:EGN48414.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rod shape-determining protein MreD
L1_008_364G1_scaffold_308_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5630..6499)
DNA (870bp) protein (290aa)
Cell shape-determining protein MreC n=3 Tax=Lachnospiraceae RepID=A7B2W4_RUMGN
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rod shape-determining protein MreC
L1_008_364G1_scaffold_308_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6501..7583)
DNA (1083bp) protein (361aa)
Cell shape determining protein MreB/Mrl family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLI9_9FIRM
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CCZ66568.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Actin-like ATPase involved in cell morphogenesis
L1_008_364G1_scaffold_308_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7549..8244)
DNA (696bp) protein (232aa)
DNA repair protein RadC n=3 Tax=Lachnospiraceae RepID=A7B2W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20266.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA replication and repair protein RadC
L1_008_364G1_scaffold_308_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8337..9929)
DNA (1593bp) protein (531aa)
FAD dependent oxidoreductase n=4 Tax=Clostridiales RepID=A7B2W1_RUMGN
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDN77734.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Uncharacterized FAD-dependent dehydrogenases
L1_008_364G1_scaffold_308_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9916..11142)
DNA (1227bp) protein (409aa)
Flavoprotein family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLL6_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:CCZ66565.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR00275
L1_008_364G1_scaffold_308_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11160..12461)
DNA (1302bp) protein (434aa)
Aluminum resistance protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TTH1_9FIRM
Aluminum resistance protein {ECO:0000313|EMBL:CCZ66564.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L1_008_364G1_scaffold_308_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12458..13426)
DNA (969bp) protein (323aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLI4_9FIRM
L1_008_364G1_scaffold_308_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13427..15421)
DNA (1995bp) protein (665aa)
DNA mismatch repair protein MutL n=3 Tax=Clostridiales RepID=F7JVT6_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA mismatch repair protein MutL
L1_008_364G1_scaffold_308_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15441..18092)
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=2 Tax=Lachnospiraceae RepID=F7JVT5_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA mismatch repair protein MutS
L1_008_364G1_scaffold_308_16
unknown

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comp(18147..18437)
DNA (291bp) protein (97aa)

This feature has no annotations

L1_008_364G1_scaffold_308_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18675..20159)
DNA (1485bp) protein (495aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=3 Tax=Lachnospiraceae RepID=A7B2V4_RUMGN
tRNA-i(6)A37 thiotransferase enzyme MiaB
L1_008_364G1_scaffold_308_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20260..21036)
DNA (777bp) protein (259aa)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B2V3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48402.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_308_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21033..22094)
DNA (1062bp) protein (354aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=3 Tax=Clostridiales RepID=A7B2V2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48401.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Fe3+ ABC superfamily ATP binding cassette transporter, membrane protein
L1_008_364G1_scaffold_308_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22116..23159)
DNA (1044bp) protein (348aa)
Periplasmic binding protein n=4 Tax=Clostridiales RepID=A7B2V1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20277.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L1_008_364G1_scaffold_308_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23553..23735)
DNA (183bp) protein (61aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A7B2U9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66526.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_364G1_scaffold_308_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23729..24298)
DNA (570bp) protein (190aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=3 Tax=Lachnospiraceae RepID=F7JVS8_9FIRM
L1_008_364G1_scaffold_308_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24276..24515)
DNA (240bp) protein (80aa)
UPF0291 protein RUMGNA_01875 n=4 Tax=Clostridiales RepID=A7B2U7_RUMGN
UPF0291 protein HMPREF0991_01277 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_308_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24570..24926)
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TTE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48396.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_308_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24997..26721)
DNA (1725bp) protein (575aa)
Polysaccharide biosynthesis protein n=4 Tax=Clostridiales RepID=A7B2U5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20282.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L1_008_364G1_scaffold_308_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26734..27231)
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Endoribonuclease YbeY n=4 Tax=Clostridiales RepID=A7B2U4_RUMGN
conserved hypothetical protein TIGR00043
L1_008_364G1_scaffold_308_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27228..28223)
DNA (996bp) protein (332aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5U5X9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66521.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L1_008_364G1_scaffold_308_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28198..29439)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TLI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48392.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Putative stage IV sporulation protein YqfD.
L1_008_364G1_scaffold_308_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29451..29768)
DNA (318bp) protein (106aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TTD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66519.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
sporulation protein YqfC
L1_008_364G1_scaffold_308_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29929..31380
DNA (1452bp) protein (484aa)
pepD; Xaa-His dipeptidase (EC:3.4.13.3)
Xaa-His dipeptidase n=2 Tax=Clostridiales RepID=A7B2U0_RUMGN
Xaa-His dipeptidase {ECO:0000313|EMBL:EDN77713.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Displaying items 1-30 of 35 in total

View Taxonomy