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L1_008_364G1_scaffold_347

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_347_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..153)
DNA (153bp) protein (51aa)
Permease protein of ABC transporter system for sugars n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y2C4_BIFBU
Permease protein of ABC transporter system for sugars
Permease protein of ABC transporter system for sugars {ECO:0000313|EMBL:ABE95224.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_364G1_scaffold_347_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

369..1379
DNA (1011bp) protein (337aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium breve RepID=F6C5V4_BIFBA
Transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AHJ20704.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_364G1_scaffold_347_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1372..2106)
DNA (735bp) protein (245aa)
Putative ribosomal pseudouridine synthase {ECO:0000313|EMBL:BAQ99487.1}; RNA pseudouridine synthase {ECO:0000313|EMBL:EFE89019.1}; EC=5.4.99.- {ECO:0000313|EMBL:EFE89019.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Pseudouridine synthase n=2 Tax=Bifidobacterium breve RepID=F9Y2C2_BIFBU
Ribosomal large subunit pseudouridine synthase D
L1_008_364G1_scaffold_347_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2150..4042)
DNA (1893bp) protein (631aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=2 Tax=Bifidobacterium breve RepID=H3L0E0_BIFBR
Glucosamine--fructose-6-phosphate aminotransferase
L1_008_364G1_scaffold_347_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4283..5113)
DNA (831bp) protein (277aa)
ABC transporter, ATP-binding protein n=4 Tax=Bifidobacterium breve RepID=D4BMY0_BIFBR
ATP-binding protein of ABC transporter system
Uncharacterized protein {ECO:0000313|EMBL:EPD76838.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_364G1_scaffold_347_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5129..6112)
DNA (984bp) protein (328aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium breve RepID=D4BMX9_BIFBR
Permease protein of ABC transporter system
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:EPD76837.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_364G1_scaffold_347_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6257..7198)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZKC1_BIFBR
Solute binding protein of ABC transporter system
Uncharacterized protein {ECO:0000313|EMBL:EPD76836.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_364G1_scaffold_347_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7332..7838)
DNA (507bp) protein (169aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C5W0_BIFBA
Solute-binding protein of ABC transporter system
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:AEF27679.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_364G1_scaffold_347_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7937..8167)
DNA (231bp) protein (77aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C5W0_BIFBA
Solute-binding protein of ABC transporter system
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:AEF27679.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_364G1_scaffold_347_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8289..8765)
DNA (477bp) protein (159aa)
SsrA-binding protein n=5 Tax=Bifidobacterium breve RepID=F6C5W1_BIFBA
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_008_364G1_scaffold_347_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8879..10225)
DNA (1347bp) protein (449aa)
CHAP domain protein n=4 Tax=Bifidobacterium breve RepID=F6C5W2_BIFBA
putative secreted protein with CHAP domain
CHAP domain protein {ECO:0000313|EMBL:EFE89011.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_364G1_scaffold_347_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10304..11227)
DNA (924bp) protein (308aa)
Cell division protein FtsX n=6 Tax=Bifidobacterium breve RepID=F6C5W3_BIFBA
Cell division protein ftsX
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_364G1_scaffold_347_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11231..12427)
DNA (1197bp) protein (399aa)
Cell division ATP-binding protein FtsE n=4 Tax=Bifidobacterium breve RepID=F6C5W4_BIFBA
Cell division ATP-binding protein ftsE
Cell division ATP-binding protein ftsE {ECO:0000313|EMBL:AHJ20694.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_364G1_scaffold_347_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12430..13554)
DNA (1125bp) protein (375aa)
Peptide chain release factor 2 n=5 Tax=Bifidobacterium breve RepID=F6C5W5_BIFBA
Bacterial Peptide Chain Release Factor 2 (RF-2)
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_364G1_scaffold_347_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13906..15360)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E590_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI87571.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Hypothetical protein
L1_008_364G1_scaffold_347_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15357..16010)
DNA (654bp) protein (218aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Peptide deformylase n=4 Tax=Bifidobacterium breve RepID=F6C5W8_BIFBA
Peptide deformylase
L1_008_364G1_scaffold_347_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16154..17467)
DNA (1314bp) protein (438aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Phosphoglucosamine mutase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L1N7_BIFBR
Phosphoglucosamine mutase
L1_008_364G1_scaffold_347_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17915..20524)
DNA (2610bp) protein (870aa)
Aminopeptidase N n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZKB0_BIFBR
Aminopeptidase N {ECO:0000313|EMBL:EPD76826.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Alanine aminopeptidase
L1_008_364G1_scaffold_347_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20566..22422)
DNA (1857bp) protein (619aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZR68_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI87576.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Metal-dependent hydrolase
L1_008_364G1_scaffold_347_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22502..23407)
DNA (906bp) protein (302aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C5X2_BIFBA
L1_008_364G1_scaffold_347_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23513..24268)
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Bifidobacterium breve RepID=F6C5X3_BIFBA
Dihydrodipicolinate reductase
L1_008_364G1_scaffold_347_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24356..25675)
DNA (1320bp) protein (440aa)
Transporter, major facilitator family protein n=5 Tax=Bifidobacterium breve RepID=F6C5X4_BIFBA
putative membrane spanning protein, member of major facilitator superfamily (MFS)
Uncharacterized protein {ECO:0000313|EMBL:EPD76822.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_364G1_scaffold_347_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25847..29782)
DNA (3936bp) protein (1312aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZKA5_BIFBR
ATP-dependent DNA helicase, UvrD/REP family
L1_008_364G1_scaffold_347_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29779..33876)
DNA (4098bp) protein (1366aa)
ATP-dependent DNA helicase, UvrD/REP family {ECO:0000313|EMBL:ABE95202.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABE95202.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Uncharacterized protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L1M9_BIFBR
ATP-dependent DNA helicase, UvrD/REP family
L1_008_364G1_scaffold_347_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33987..35159
DNA (1173bp) protein (391aa)
Kinase domain protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E0L0_BIFBR
Kinase domain protein {ECO:0000313|EMBL:ERI87582.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Serine/threonine protein kinase
L1_008_364G1_scaffold_347_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35131..41655
DNA (6525bp) protein (2175aa)
Large protein with C-fibronectin type III domain protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L1M7_BIFBR
ATPase family protein {ECO:0000313|EMBL:ERI87583.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
AAA ATPase
L1_008_364G1_scaffold_347_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41669..42958
DNA (1290bp) protein (430aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=F6C5X9_BIFBA
Hypothetical protein with DUF58 domain
Uncharacterized protein {ECO:0000313|EMBL:AEF26356.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_364G1_scaffold_347_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42955..45384
DNA (2430bp) protein (810aa)
Transglutaminase-like protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CU37_BIFBR
Transglutaminase-like protein {ECO:0000313|EMBL:ERI87588.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Conserved hypothetical membrane spanning protein
L1_008_364G1_scaffold_347_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(45484..49521)
DNA (4038bp) protein (1346aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
DNA-directed RNA polymerase subunit beta' n=8 Tax=Bifidobacterium RepID=F6C5Y1_BIFBA
DNA-directed RNA polymerase beta' chain
L1_008_364G1_scaffold_347_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(49612..50352)
DNA (741bp) protein (247aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bifidobacterium breve RepID=UPI0002F3C8AD
DNA-directed RNA polymerase beta chain
Displaying 30 items

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