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L1_008_364G1_scaffold_958

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_958_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1098)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFD7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN46865.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family
L1_008_364G1_scaffold_958_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1291..1821)
DNA (531bp) protein (177aa)
50S ribosomal protein L17 n=4 Tax=Clostridiales RepID=A7B516_RUMGN
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LSU ribosomal protein L17P
L1_008_364G1_scaffold_958_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1925..2884)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA-directed RNA polymerase subunit alpha n=4 Tax=Clostridiales RepID=A7B517_RUMGN
DNA-directed RNA polymerase subunit alpha
L1_008_364G1_scaffold_958_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2974..3567)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=4 Tax=Clostridiales RepID=F7JY70_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
SSU ribosomal protein S4P
L1_008_364G1_scaffold_958_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3673..4068)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=5 Tax=Clostridiales RepID=A7B519_RUMGN
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SSU ribosomal protein S11P
L1_008_364G1_scaffold_958_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4130..4498)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFE2_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
30S ribosomal protein S13
L1_008_364G1_scaffold_958_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5087..5305)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=8 Tax=Clostridiales RepID=A7B522_RUMGN
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
translation initiation factor IF-1
L1_008_364G1_scaffold_958_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5341..5586)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TW55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67524.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_364G1_scaffold_958_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5590..6234)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPI3_9FIRM
L1_008_364G1_scaffold_958_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6337..7668)
DNA (1332bp) protein (444aa)
Protein translocase subunit SecY n=4 Tax=Clostridiales RepID=A7B525_RUMGN
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
protein translocase subunit secY/sec61 alpha
L1_008_364G1_scaffold_958_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7668..8108)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=3 Tax=Clostridiales RepID=F7JY77_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LSU ribosomal protein L15P
L1_008_364G1_scaffold_958_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8134..8316)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=2 Tax=Clostridiales RepID=A7B527_RUMGN
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LSU ribosomal protein L30P
L1_008_364G1_scaffold_958_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8330..8839)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=2 Tax=Clostridiales RepID=A7B528_RUMGN
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
SSU ribosomal protein S5P
L1_008_364G1_scaffold_958_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8856..9224)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=4 Tax=Clostridiales RepID=A7B529_RUMGN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LSU ribosomal protein L18P
L1_008_364G1_scaffold_958_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9242..9784)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=4 Tax=Clostridiales RepID=A7B530_RUMGN
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LSU ribosomal protein L6P
L1_008_364G1_scaffold_958_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9889..10290)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=4 Tax=Clostridiales RepID=A7B531_RUMGN
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Ribosomal protein S8
L1_008_364G1_scaffold_958_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10340..10525)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=4 Tax=Clostridiales RepID=A7B532_RUMGN
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Ribosomal protein S14
L1_008_364G1_scaffold_958_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10539..11078)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=3 Tax=Clostridiales RepID=F7JY84_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
rplE; 50S ribosomal protein L5
L1_008_364G1_scaffold_958_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11102..11413)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=4 Tax=Clostridiales RepID=A7B534_RUMGN
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L24P
L1_008_364G1_scaffold_958_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11426..11794)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=4 Tax=Clostridiales RepID=A7B535_RUMGN
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L14P
L1_008_364G1_scaffold_958_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11852..12109)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=4 Tax=Clostridiales RepID=A7B536_RUMGN
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
30S ribosomal protein S17
L1_008_364G1_scaffold_958_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12121..12327)
DNA (207bp) protein (69aa)
50S ribosomal protein L29 n=4 Tax=Clostridiales RepID=A7B537_RUMGN
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
50S ribosomal protein L29
L1_008_364G1_scaffold_958_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12317..12754)
DNA (438bp) protein (146aa)
50S ribosomal protein L16 n=4 Tax=Clostridiales RepID=A7B538_RUMGN
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L16P
L1_008_364G1_scaffold_958_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12754..13410)
DNA (657bp) protein (219aa)
30S ribosomal protein S3 n=4 Tax=Clostridiales RepID=A7B539_RUMGN
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
SSU ribosomal protein S3P
L1_008_364G1_scaffold_958_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13422..13808)
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=4 Tax=Clostridiales RepID=A7B540_RUMGN
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LSU ribosomal protein L22P
L1_008_364G1_scaffold_958_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13843..14124)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=4 Tax=Clostridiales RepID=A7B541_RUMGN
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SSU ribosomal protein S19P
L1_008_364G1_scaffold_958_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14151..14993)
DNA (843bp) protein (281aa)
50S ribosomal protein L2 n=4 Tax=Clostridiales RepID=A7B542_RUMGN
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L2P
L1_008_364G1_scaffold_958_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15060..15359)
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=4 Tax=Clostridiales RepID=A7B543_RUMGN
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Ribosomal protein L23
Displaying 28 items

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