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L1_008_364G1_scaffold_1006

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_1006_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..93)
DNA (93bp) protein (31aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=V8BWZ3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47697.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_364G1_scaffold_1006_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(96..953)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BW13_RUMGN
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
conserved hypothetical protein TIGR00726
L1_008_364G1_scaffold_1006_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(978..1331)
DNA (354bp) protein (118aa)
UPF0102 protein RUMGNA_01110 n=4 Tax=Clostridiales RepID=A7B0N4_RUMGN
UPF0102 protein HMPREF1201_01124 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
conserved hypothetical protein TIGR00252
L1_008_364G1_scaffold_1006_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1367..2119)
DNA (753bp) protein (251aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Clostridiales RepID=R5TMM4_9FIRM
L1_008_364G1_scaffold_1006_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2144..2701)
DNA (558bp) protein (186aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=4 Tax=Clostridiales RepID=A7B0N6_RUMGN
L1_008_364G1_scaffold_1006_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2720..3586)
DNA (867bp) protein (289aa)
Ribosome biogenesis GTPase A n=3 Tax=Clostridiales RepID=A7B0N7_RUMGN
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosome biogenesis GTP-binding protein YlqF
L1_008_364G1_scaffold_1006_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3601..4209)
DNA (609bp) protein (203aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TMF8_9FIRM
L1_008_364G1_scaffold_1006_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4275..4622)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=4 Tax=Clostridiales RepID=A7B0N9_RUMGN
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosomal protein L19, bacterial type
L1_008_364G1_scaffold_1006_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4726..5484)
DNA (759bp) protein (253aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Clostridiales RepID=R5TMM8_9FIRM
L1_008_364G1_scaffold_1006_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5516..6034)
DNA (519bp) protein (173aa)
Ribosome maturation factor RimM n=2 Tax=Clostridiales RepID=F7JWV4_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
16S rRNA processing protein RimM
L1_008_364G1_scaffold_1006_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6111..6341)
DNA (231bp) protein (77aa)
UPF0109 protein BN481_02175 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UDG7_9FIRM
UPF0109 protein BN481_02175 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
RNA-binding protein (KH domain)
L1_008_364G1_scaffold_1006_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6366..6611)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Clostridiales RepID=A7B0P3_RUMGN
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SSU ribosomal protein S16P
L1_008_364G1_scaffold_1006_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6657..7898)
DNA (1242bp) protein (414aa)
Signal recognition particle protein n=3 Tax=Clostridiales RepID=A7B0P4_RUMGN
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal recognition particle protein
L1_008_364G1_scaffold_1006_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7900..8256)
DNA (357bp) protein (119aa)
UPF0122 protein HMPREF0991_01626 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMN3_9FIRM
UPF0122 protein BN481_02178 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_364G1_scaffold_1006_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8298..9155)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U741_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66946.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Subtilisin-like serine proteases
L1_008_364G1_scaffold_1006_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9261..9527)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5UDH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66947.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_364G1_scaffold_1006_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9916..10050)
DNA (135bp) protein (45aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B0V2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47715.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_1006_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10182..10706
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47716.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_1006_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10669..10923
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47717.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_1006_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11008..11766
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pseudouridylate synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A n=4 Tax=Clostridiales RepID=A7B0V5_RUMGN
L1_008_364G1_scaffold_1006_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11766..12599
DNA (834bp) protein (278aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B0V6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66952.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted membrane protein
L1_008_364G1_scaffold_1006_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12601..13062)
DNA (462bp) protein (154aa)
pilD; type IV prepilin-like leader peptidase PilD (EC:3.4.23.43)
Peptidase A24 family n=2 Tax=Clostridiales RepID=R5TMH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19002.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L1_008_364G1_scaffold_1006_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13059..13880)
DNA (822bp) protein (274aa)
PHP domain protein n=4 Tax=Clostridiales RepID=A7B0V8_RUMGN
PHP domain protein {ECO:0000313|EMBL:CCZ66954.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metal-dependent phosphoesterases (PHP family)
L1_008_364G1_scaffold_1006_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14034..15053)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0V9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78448.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L1_008_364G1_scaffold_1006_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15598..16158)
DNA (561bp) protein (187aa)
ATP:cob(I)alamin adenosyltransferase n=4 Tax=Clostridiales RepID=A7B0W0_RUMGN
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:CCZ66956.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATP:cob(I)alamin adenosyltransferase
L1_008_364G1_scaffold_1006_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16189..16518)
DNA (330bp) protein (110aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A7B0W1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66957.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_364G1_scaffold_1006_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16515..18329)
DNA (1815bp) protein (605aa)
Diol dehydratase / glycerol dehydratase reactivase large subunit n=4 Tax=Clostridiales RepID=A7B0W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47725.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
diol/glycerol dehydratase reactivating factor large subunit
L1_008_364G1_scaffold_1006_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18326..18718)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TUK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66959.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
dehydratase small subunit
L1_008_364G1_scaffold_1006_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18719..19387)
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19009.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
dehydratase medium subunit
L1_008_364G1_scaffold_1006_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19399..21063)
DNA (1665bp) protein (555aa)
Glycerol dehydratase large subunit n=3 Tax=Clostridiales RepID=F7JWX3_9FIRM
Glycerol dehydratase large subunit {ECO:0000313|EMBL:ETD19010.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
dehydratase large subunit
Displaying items 1-30 of 32 in total

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