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L1_008_364G1_scaffold_1169

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_1169_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..522
DNA (522bp) protein (174aa)
Protease do n=1 Tax=Escherichia coli HVH 190 (4-3255514) RepID=T7RPG5_ECOLX
degP; serine endoprotease
DegP {ECO:0000313|EMBL:EHU50859.1}; TaxID=868140 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2C.;"
L1_008_364G1_scaffold_1169_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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715..1830
DNA (1116bp) protein (372aa)
Sugar diacid regulator n=67 Tax=Escherichia coli RepID=T2MMJ1_ECOLX
cdaR; Sugar diacid regulator
Carbohydrate diacid regulator {ECO:0000313|EMBL:CKH68680.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L1_008_364G1_scaffold_1169_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1884..2270)
DNA (387bp) protein (129aa)
UPF0325 protein YaeH n=1417 Tax=Enterobacteriaceae RepID=YAEH_ECO24
hypothetical protein
UPF0325 protein YaeH {ECO:0000256|HAMAP-Rule:MF_01519}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
L1_008_364G1_scaffold_1169_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2568..3392)
DNA (825bp) protein (275aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=868135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1C.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=424 Tax=Escherichia RepID=DAPD_ECO27
L1_008_364G1_scaffold_1169_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3423..6095)
DNA (2673bp) protein (891aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000255|HAMAP-Rule:MF_00277}; Short=UTase/UR {ECO:0000255|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000255|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000255|HAMAP-Rule:MF_00277}; Includes:; [Protein-PII] uridylyltransferase {ECO:0000255|HAMAP-Rule:MF_00277}; Short=PII uridylyltransferase {ECO:0000255|HAMAP-Rule:MF_00277};; Short=UTase {ECO:0000255|HAMAP-Rule:MF_00277};; EC=2.7.7.59 {ECO:0000255|HAMAP-Rule:MF_00277};; Includes:; [Protein-PII]-UMP uridylyl-removing enzyme {ECO:0000255|HAMAP-Rule:MF_00277}; Short=UR {ECO:0000255|HAMAP-Rule:MF_00277};; EC=3.1.4.- {ECO:0000255|HAMAP-Rule:MF_00277};; TaxID=405955 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O1:K1 / APEC.;"
glnD; protein-P-II uridylyltransferase (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=72 Tax=Escherichia RepID=GLND_ECO45
L1_008_364G1_scaffold_1169_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6157..6951)
DNA (795bp) protein (265aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Methionine aminopeptidase n=1336 Tax=Enterobacteriaceae RepID=MAP1_ECO57
L1_008_364G1_scaffold_1169_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7319..8044
DNA (726bp) protein (242aa)
30S ribosomal protein S2 n=1 Tax=Escherichia coli LAU-EC10 RepID=V8K7R8_ECOLX
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2845650.;"
L1_008_364G1_scaffold_1169_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8179..9030
DNA (852bp) protein (284aa)
Elongation factor Ts n=1359 Tax=Enterobacteriaceae RepID=EFTS_ECO24
tsf; elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
L1_008_364G1_scaffold_1169_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9177..9902
DNA (726bp) protein (242aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=656414 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H736.;"
Uridylate kinase n=1427 Tax=Enterobacteriaceae RepID=PYRH_ECO24
L1_008_364G1_scaffold_1169_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10031..10588
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1434 Tax=Bacteria RepID=RRF_ECO24
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1116032 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2871950.;"
L1_008_364G1_scaffold_1169_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10680..11876
DNA (1197bp) protein (399aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=126 Tax=Escherichia RepID=A1A7L7_ECOK1
L1_008_364G1_scaffold_1169_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12065..12823
DNA (759bp) protein (253aa)
undecaprenyl pyrophosphate synthase (EC:2.5.1.31)
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.31 {ECO:0000256|HAMAP-Rule:MF_01139};; Ditrans,polycis-undecaprenylcistransferase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; TaxID=656414 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H736.;"
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) n=1179 Tax=Enterobacteriaceae RepID=A7ZHR4_ECO24
L1_008_364G1_scaffold_1169_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12823..12975
DNA (153bp) protein (51aa)
Uncharacterized protein n=336 Tax=Escherichia coli RepID=T2MLK3_ECOLX
hypothetical protein
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:ELJ77041.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L1_008_364G1_scaffold_1169_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12944..13693
DNA (750bp) protein (250aa)
cdsA; CDP-diglyceride synthase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Phosphatidate cytidylyltransferase n=240 Tax=Escherichia RepID=E2QFA2_ECOLX
L1_008_364G1_scaffold_1169_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13705..15057
DNA (1353bp) protein (451aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Protease ecfE n=324 Tax=Escherichia RepID=E2QFA3_ECOLX
zinc metallopeptidase RseP
L1_008_364G1_scaffold_1169_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15087..17519
DNA (2433bp) protein (811aa)
Outer membrane protein assembly factor BamA n=1284 Tax=Enterobacteriaceae RepID=BAMA_ECO24
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=868191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12A.;"
yaeT; outer membrane protein assembly factor YaeT
L1_008_364G1_scaffold_1169_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17641..18126
DNA (486bp) protein (162aa)
Chaperone protein Skp n=1412 Tax=Enterobacteriaceae RepID=SKP_ECO57
skp; periplasmic chaperone
Chaperone protein skp {ECO:0000256|PIRNR:PIRNR002094}; TaxID=754086 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli STEC_DG131-3.;"
L1_008_364G1_scaffold_1169_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18130..19155
DNA (1026bp) protein (342aa)
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; Short=UDP-3-O-(3-OHC14)-GlcN N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523};; EC=2.3.1.191 {ECO:0000256|HAMAP-Rule:MF_00523, ECO:0000313|EMBL:CKH69269.1};; UDP-3-O-(3-hydroxytetradecanoyl)glucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase n=91 Tax=Escherichia RepID=LPXD_ECOUT
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
L1_008_364G1_scaffold_1169_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19260..19715
DNA (456bp) protein (152aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=550676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B185.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1398 Tax=Enterobacteriaceae RepID=FABZ_ECO24
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase
L1_008_364G1_scaffold_1169_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19719..20507
DNA (789bp) protein (263aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1168 Tax=cellular organisms RepID=LPXA_ECO24
L1_008_364G1_scaffold_1169_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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20507..21655
DNA (1149bp) protein (383aa)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Lipid-A-disaccharide synthase n=373 Tax=Escherichia RepID=LPXB_ECO45
lipid-A-disaccharide synthase
L1_008_364G1_scaffold_1169_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21652..22248
DNA (597bp) protein (199aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1280976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 25 (4-5851939).;"
Ribonuclease HII n=86 Tax=Escherichia RepID=RNH2_ECO45
L1_008_364G1_scaffold_1169_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22285..22812
DNA (528bp) protein (176aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170, ECO:0000313|EMBL:CAR01559.1};; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
DNA polymerase III subunit alpha, partial n=1 Tax=Escherichia coli RepID=UPI000370EAD6
Displaying 23 items

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