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L1_008_364G1_scaffold_1323

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_1323_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..179)
DNA (177bp) protein (59aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TL49_9FIRM
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000313|EMBL:CCZ66425.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_364G1_scaffold_1323_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(252..605)
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C082_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46114.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_364G1_scaffold_1323_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(690..1583)
DNA (894bp) protein (298aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBV2_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
RNA polymerase, sigma 70 subunit, RpoD
L1_008_364G1_scaffold_1323_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1620..2678)
DNA (1059bp) protein (353aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TL29_9FIRM
L1_008_364G1_scaffold_1323_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2675..3436)
DNA (762bp) protein (254aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TL29_9FIRM
L1_008_364G1_scaffold_1323_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3467..4225)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=3 Tax=Clostridiales RepID=A7B7M1_RUMGN
L1_008_364G1_scaffold_1323_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4411..5301)
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=4 Tax=Clostridiales RepID=A7B7M3_RUMGN
L1_008_364G1_scaffold_1323_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5401..6027)
DNA (627bp) protein (209aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5U5M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN46119.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Single-stranded DNA-binding protein
L1_008_364G1_scaffold_1323_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6264..8090
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA n=3 Tax=Clostridiales RepID=F7JYX4_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:ETD20824.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
GTP-binding protein TypA/BipA
L1_008_364G1_scaffold_1323_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8104..8715
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TL36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66433.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
membrane protein
L1_008_364G1_scaffold_1323_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8807..9349
DNA (543bp) protein (181aa)
Ribosomal subunit interface protein n=2 Tax=Ruminococcus gnavus RepID=A7B7M8_RUMGN
Ribosomal subunit interface protein {ECO:0000313|EMBL:ETD20826.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosomal subunit interface protein
L1_008_364G1_scaffold_1323_12
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9463..11067)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84985.2}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
transposase
L1_008_364G1_scaffold_1323_13
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11203..11985)
DNA (783bp) protein (261aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N578_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78459.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L1_008_364G1_scaffold_1323_14
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(11998..12960)
DNA (963bp) protein (321aa)
Transketolase central region n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MSM8_9THEO
transketolase
Tax=RBG_16_NC10_65_8_curated
L1_008_364G1_scaffold_1323_15
Leptotrichia wadei, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(12960..13832)
DNA (873bp) protein (291aa)
Transketolase, thiamine diphosphate binding domain protein n=1 Tax=Leptotrichia wadei F0279 RepID=U2RE27_9FUSO
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:ERK48972.1}; TaxID=888055 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia wadei F0279.;"
transketolase
L1_008_364G1_scaffold_1323_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13856..14923)
DNA (1068bp) protein (356aa)
PTS system, Fru family, IIC component n=2 Tax=Firmicutes RepID=H1B5A4_9FIRM
PTS system, Fru family, IIC component domain protein {ECO:0000313|EMBL:EQJ59490.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system, fructose subfamily, IIC component
L1_008_364G1_scaffold_1323_17
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(14933..15250)
DNA (318bp) protein (106aa)
PTS system, Fru family, IIB component n=2 Tax=Firmicutes RepID=H1BPK4_9FIRM
PTS system, Fru family, IIB component {ECO:0000313|EMBL:EFE47882.1}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
PTS system fructose-specific transporter subunit IIB
L1_008_364G1_scaffold_1323_18
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15257..15697)
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VQE8_9FIRM
PTS system, fructose subfamily, IIA component {ECO:0000313|EMBL:ENY88761.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
putative PTS IIA-like nitrogen-regulatory protein PtsN
L1_008_364G1_scaffold_1323_19
unknown

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comp(15775..15987)
DNA (213bp) protein (71aa)

This feature has no annotations

L1_008_364G1_scaffold_1323_20
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15974..17968)
DNA (1995bp) protein (665aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BPJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO81388.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
MtlR family PTS modulated transcriptional regulator
L1_008_364G1_scaffold_1323_21
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18276..20216)
DNA (1941bp) protein (647aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBX3_9FIRM
L1_008_364G1_scaffold_1323_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20513..20986)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C156_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20827.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
conserved hypothetical protein TIGR00257
L1_008_364G1_scaffold_1323_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21204..23765
DNA (2562bp) protein (854aa)
penicillin-binding protein, 1A family (EC:2.4.1.- 3.4.-.-)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C090_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20828.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L1_008_364G1_scaffold_1323_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23657..23944)
DNA (288bp) protein (96aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B7N2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20829.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Protein of unknown function (DUF3343).
L1_008_364G1_scaffold_1323_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23941..24432)
DNA (492bp) protein (164aa)
Cysteine desulfurase n=2 Tax=Lachnospiraceae RepID=F7JYY0_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:ETD20830.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
cysteine desulfurase family protein
Displaying 25 items

View Taxonomy