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L1_008_364G1_scaffold_254

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_254_1
unknown

Not on your lists

comp(95..508)
DNA (414bp) protein (138aa)

This feature has no annotations

L1_008_364G1_scaffold_254_2
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(971..1492)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YTR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24846.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_364G1_scaffold_254_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1845..2063)
DNA (219bp) protein (73aa)
Toxin-antitoxin system antitoxin component Xre family n=1 Tax=Roseburia sp. CAG:197 RepID=R5YBA9_9FIRM
Toxin-antitoxin system antitoxin component Xre family {ECO:0000313|EMBL:CDA24843.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Helix-turn-helix.
L1_008_364G1_scaffold_254_4
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2137..3594)
DNA (1458bp) protein (486aa)
Flagellin and related hook-associated proteins n=1 Tax=Roseburia sp. CAG:303 RepID=R7IYT2_9FIRM
Flagellin and related hook-associated proteins {ECO:0000313|EMBL:CDE55752.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
Flagellin and related hook-associated proteins
L1_008_364G1_scaffold_254_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3864..4334)
DNA (471bp) protein (157aa)
CsrA global regulatory protein family n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB20_9FIRM
CsrA global regulatory protein family {ECO:0000313|EMBL:CDA24030.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Global regulator protein family.
L1_008_364G1_scaffold_254_6
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4425..4871
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24029.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
XRE family transcriptional regulator
L1_008_364G1_scaffold_254_7
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4906..5994)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24028.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
A/G-specific DNA glycosylase
L1_008_364G1_scaffold_254_8
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6132..6935)
DNA (804bp) protein (268aa)
3-hydroxybutyryl-coA dehydratase n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z5I5_9FIRM
3-hydroxybutyryl-coA dehydratase {ECO:0000313|EMBL:CDA24027.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
3-hydroxybutyryl-coA dehydratase
L1_008_364G1_scaffold_254_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7031..7618)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77930.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_008_364G1_scaffold_254_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7805..9886)
DNA (2082bp) protein (694aa)
PTS system lactose/cellobiose family IIC component n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRH6_9FIRM
PTS system lactose/cellobiose family IIC component {ECO:0000313|EMBL:CDA24026.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_364G1_scaffold_254_11
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10026..11315)
DNA (1290bp) protein (430aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24025.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_364G1_scaffold_254_12
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11430..12677)
DNA (1248bp) protein (416aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Serine hydroxymethyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH39_9FIRM
glyA; serine hydroxymethyltransferase
L1_008_364G1_scaffold_254_13
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12788..13072)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9B4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24023.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Predicted membrane protein
L1_008_364G1_scaffold_254_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13161..15467)
DNA (2307bp) protein (769aa)
Bifunctional preprotein translocase subunit SecD/SecF n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z5I0_9FIRM
Bifunctional preprotein translocase subunit SecD/SecF {ECO:0000313|EMBL:CDA24022.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
bifunctional preprotein translocase subunit SecD/SecF
L1_008_364G1_scaffold_254_15
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15489..16844)
DNA (1356bp) protein (452aa)
Arylsulfatase regulator (Fe-S oxidoreductase) n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRG9_9FIRM
Arylsulfatase regulator (Fe-S oxidoreductase) {ECO:0000313|EMBL:CDA24021.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
arylsulfatase regulator (Fe-S oxidoreductase)
L1_008_364G1_scaffold_254_16
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17074..17217)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24020.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_364G1_scaffold_254_17
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17327..17764)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24019.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_364G1_scaffold_254_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17815..19206)
DNA (1392bp) protein (464aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9A9_9FIRM
L1_008_364G1_scaffold_254_19
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19252..20451)
DNA (1200bp) protein (400aa)
FKBP-type peptidyl-prolyl cis-trans isomerase (Trigger factor) n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z5H3_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
L1_008_364G1_scaffold_254_20
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20607..21092
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24016.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_364G1_scaffold_254_21
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21137..21583)
DNA (447bp) protein (149aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB09_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA24015.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_364G1_scaffold_254_22
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21624..22319)
DNA (696bp) protein (232aa)
Stage II sporulation protein R n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH31_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:CDA24014.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
stage II sporulation protein R
L1_008_364G1_scaffold_254_23
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22316..24106)
DNA (1791bp) protein (597aa)
Spore germination protein-like protein YndE n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9A5_9FIRM
Spore germination protein-like protein YndE {ECO:0000313|EMBL:CDA24013.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Spore germination protein.
L1_008_364G1_scaffold_254_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24110..25723)
DNA (1614bp) protein (538aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VB19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77912.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Bacillus/Clostridium GerA spore germination protein.
L1_008_364G1_scaffold_254_25
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25728..26402)
DNA (675bp) protein (225aa)
GntR domain protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQW4_9FIRM
GntR domain protein {ECO:0000313|EMBL:CDA23831.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
transcriptional regulator, GntR family
L1_008_364G1_scaffold_254_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26439..27311)
DNA (873bp) protein (291aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIP2_9FIRM
L1_008_364G1_scaffold_254_27
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27410..28222)
DNA (813bp) protein (271aa)
ABC-3 protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGF4_9FIRM
ABC-3 protein {ECO:0000313|EMBL:CDA23829.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L1_008_364G1_scaffold_254_28
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28215..28988)
DNA (774bp) protein (258aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC-type Mn/Zn transport systems ATPase component n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8P5_9FIRM
ABC-type Mn/Zn transport systems ATPase component {ECO:0000313|EMBL:CDA23828.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_364G1_scaffold_254_29
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29003..29908)
DNA (906bp) protein (302aa)
Adhesion lipoprotein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z4S8_9FIRM
Adhesion lipoprotein {ECO:0000313|EMBL:CDA23827.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L1_008_364G1_scaffold_254_30
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29922..30683)
DNA (762bp) protein (254aa)
Probable GTP-binding protein EngB n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQV9_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
Displaying items 1-30 of 38 in total

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