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L2_013_000G1_scaffold_3990

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_3990_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..275)
DNA (273bp) protein (91aa)
LD-carboxypeptidase family protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R9X7_CLOPF
mccF; LD-carboxypeptidase
LD-carboxypeptidase family protein {ECO:0000313|EMBL:EDS80801.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_013_000G1_scaffold_3990_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(450..1568)
DNA (1119bp) protein (373aa)
Peptidase n=5 Tax=Clostridium perfringens RepID=H7CZG8_CLOPF
pepT; peptidase
Probable peptidase {ECO:0000313|EMBL:BAB82169.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_013_000G1_scaffold_3990_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1757..3160)
DNA (1404bp) protein (468aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Glycine--tRNA ligase n=10 Tax=Clostridium perfringens RepID=SYG_CLOPE
L2_013_000G1_scaffold_3990_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3847..5352)
DNA (1506bp) protein (502aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Lysine--tRNA ligase n=5 Tax=Clostridium perfringens RepID=SYK_CLOPE
L2_013_000G1_scaffold_3990_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5378..5854)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=11 Tax=Clostridium perfringens RepID=GREA_CLOP1
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_013_000G1_scaffold_3990_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6133..7113)
DNA (981bp) protein (327aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
tRNA-dihydrouridine synthase n=10 Tax=Clostridium perfringens RepID=H7CZH2_CLOPF
putative dihydrouridine synthase
L2_013_000G1_scaffold_3990_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7120..7899)
DNA (780bp) protein (260aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Type III pantothenate kinase n=10 Tax=Clostridium perfringens RepID=COAX_CLOP1
L2_013_000G1_scaffold_3990_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8102..9772)
DNA (1671bp) protein (557aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase {ECO:0000255|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000255|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000255|HAMAP-Rule:MF_01543}; Short=FHS {ECO:0000255|HAMAP-Rule:MF_01543};; Short=FTHFS {ECO:0000255|HAMAP-Rule:MF_01543};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVE7_CLOPF
L2_013_000G1_scaffold_3990_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9974..11635)
DNA (1662bp) protein (554aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TMI2_CLOP1
ftsH; ATP-dependent metalloprotease FtsH
L2_013_000G1_scaffold_3990_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11710..12261)
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase n=5 Tax=Clostridium perfringens RepID=H7CZH6_CLOPF
hprT; hypoxanthine phosphoribosyltransferase
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EIA15927.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_013_000G1_scaffold_3990_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12264..13673)
DNA (1410bp) protein (470aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
tilS; tRNA(Ile)-lysidine synthetase (EC:6.-.-.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RK83_CLOPF
L2_013_000G1_scaffold_3990_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13890..14357)
DNA (468bp) protein (156aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E {ECO:0000313|EMBL:EDT14430.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EDT14430.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Stage II sporulation protein E n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RTI9_CLOPF
Displaying 12 items

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