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L2_013_000G1_scaffold_98

Search features with annotation key words

Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_98_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(3..182)
DNA (180bp) protein (60aa)
UPI0003D689BC related cluster n=1 Tax=unknown RepID=UPI0003D689BC
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
transcription elongation factor GreA
L2_013_000G1_scaffold_98_2
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(287..1276)
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D5FEC0 related cluster n=1 Tax=unknown RepID=UPI0003D5FEC0
tRNA-dihydrouridine synthase
L2_013_000G1_scaffold_98_3
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1260..2024)
DNA (765bp) protein (255aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D68711 related cluster n=1 Tax=unknown RepID=UPI0003D68711
type III pantothenate kinase
L2_013_000G1_scaffold_98_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2036..3019)
DNA (984bp) protein (328aa)
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Dialister micraerophilus RepID=F2BVU0_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
biotin--acetyl-CoA-carboxylase ligase
L2_013_000G1_scaffold_98_5
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(3155..5149)
DNA (1995bp) protein (665aa)
UPI0003D5F083 related cluster n=1 Tax=unknown RepID=UPI0003D5F083
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:ETI86205.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
ATP-dependent zinc metalloprotease FtsH
L2_013_000G1_scaffold_98_6
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5226..5765)
DNA (540bp) protein (180aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
UPI0003D59B8A related cluster n=1 Tax=unknown RepID=UPI0003D59B8A
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KGF11767.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
L2_013_000G1_scaffold_98_7
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(5731..7122)
DNA (1392bp) protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D682B8 related cluster n=1 Tax=unknown RepID=UPI0003D682B8
tRNA(Ile)-lysidine synthetase
L2_013_000G1_scaffold_98_8
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7119..8012)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11769.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
Ppx/GppA phosphatase
L2_013_000G1_scaffold_98_9
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8065..8532)
DNA (468bp) protein (156aa)
UPI0003D64DBB related cluster n=1 Tax=unknown RepID=UPI0003D64DBB
Uncharacterized protein {ECO:0000313|EMBL:KGF11770.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
general stress protein 13
L2_013_000G1_scaffold_98_10
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8609..8962)
DNA (354bp) protein (118aa)
UPI0003D5A175 related cluster n=1 Tax=unknown RepID=UPI0003D5A175
Uncharacterized protein {ECO:0000313|EMBL:ETI86461.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
septum formation initiator
L2_013_000G1_scaffold_98_11
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9060..9431)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Megamonas RepID=D4KEE6_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
LSU ribosomal protein L12P
L2_013_000G1_scaffold_98_12
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(9461..9991)
DNA (531bp) protein (177aa)
UPI0003D67DB4 related cluster n=1 Tax=unknown RepID=UPI0003D67DB4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L10
L2_013_000G1_scaffold_98_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10172..10879)
DNA (708bp) protein (236aa)
UPI0003D60A86 related cluster n=1 Tax=unknown RepID=UPI0003D60A86
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
50S ribosomal protein L1
L2_013_000G1_scaffold_98_14
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(10911..11336)
DNA (426bp) protein (142aa)
UPI0003D5A812 related cluster n=1 Tax=unknown RepID=UPI0003D5A812
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L11
L2_013_000G1_scaffold_98_15
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11408..11959)
DNA (552bp) protein (184aa)
UPI0003D60133 related cluster n=1 Tax=unknown RepID=UPI0003D60133
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
NusG antitermination factor
L2_013_000G1_scaffold_98_16
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11969..12196)
DNA (228bp) protein (76aa)
UPI0003D5D105 related cluster n=1 Tax=unknown RepID=UPI0003D5D105
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
preprotein translocase subunit SecE
L2_013_000G1_scaffold_98_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(12233..12382)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGN8_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L33
L2_013_000G1_scaffold_98_18
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(12634..12984)
DNA (351bp) protein (117aa)
UPI0003D5AE39 related cluster n=1 Tax=unknown RepID=UPI0003D5AE39
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L20
L2_013_000G1_scaffold_98_19
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13003..13200)
DNA (198bp) protein (66aa)
UPI0003D607F7 related cluster n=1 Tax=unknown RepID=UPI0003D607F7
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
LSU ribosomal protein L35P
L2_013_000G1_scaffold_98_20
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13212..13616)
DNA (405bp) protein (135aa)
UPI0003D67593 related cluster n=1 Tax=unknown RepID=UPI0003D67593
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
translation initiation factor IF-3
L2_013_000G1_scaffold_98_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14103..15299
DNA (1197bp) protein (399aa)
UPI0003D687A9 related cluster n=1 Tax=unknown RepID=UPI0003D687A9
UPF0348 protein Q612_NSC00231G0005 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
L2_013_000G1_scaffold_98_22
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15296..16414
DNA (1119bp) protein (373aa)
UPI0003D6714D related cluster n=1 Tax=unknown RepID=UPI0003D6714D
Uncharacterized protein {ECO:0000313|EMBL:ETI87314.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
transporter, YbiR family
L2_013_000G1_scaffold_98_23
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16460..16993)
DNA (534bp) protein (178aa)
UPI0003D5B50A related cluster n=1 Tax=unknown RepID=UPI0003D5B50A
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
bifunctional protein pyrR
L2_013_000G1_scaffold_98_24
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(16993..17901)
DNA (909bp) protein (303aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D6523C related cluster n=1 Tax=unknown RepID=UPI0003D6523C
pseudouridine synthase
L2_013_000G1_scaffold_98_25
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17901..18335)
DNA (435bp) protein (145aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D61785 related cluster n=1 Tax=unknown RepID=UPI0003D61785
lipoprotein signal peptidase
L2_013_000G1_scaffold_98_26
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18462..19439)
DNA (978bp) protein (326aa)
UPI0003D5DF3C related cluster n=1 Tax=unknown RepID=UPI0003D5DF3C
3D protein {ECO:0000313|EMBL:ETI86343.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
L2_013_000G1_scaffold_98_27
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19827..21977)
DNA (2151bp) protein (717aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D600B0 related cluster n=1 Tax=unknown RepID=UPI0003D600B0
polyphosphate kinase
L2_013_000G1_scaffold_98_28
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21974..23527)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11788.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
Exopolyphosphatase-like protein
L2_013_000G1_scaffold_98_29
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23704..25299
DNA (1596bp) protein (532aa)
UPI0003D5F105 related cluster n=1 Tax=unknown RepID=UPI0003D5F105
Uncharacterized protein {ECO:0000313|EMBL:KGF11789.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
exopolyphosphatase
L2_013_000G1_scaffold_98_30
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25342..26109)
DNA (768bp) protein (256aa)
UPI0003D5C663 related cluster n=1 Tax=unknown RepID=UPI0003D5C663
Short-chain dehydrogenase {ECO:0000313|EMBL:KGF11790.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
short-chain dehydrogenase/reductase SDR
Displaying items 1-30 of 127 in total

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