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L2_013_000G1_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_105_1
unknown

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3..158
DNA (156bp) protein (52aa)

This feature has no annotations

L2_013_000G1_scaffold_105_2
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(383..1345)
DNA (963bp) protein (321aa)
Bile acid transporter n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XMX6_9CLOT
Bile acid transporter {ECO:0000313|EMBL:CDA10006.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
bile acid:sodium symporter
L2_013_000G1_scaffold_105_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1709..2914)
DNA (1206bp) protein (402aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
UPI0003D63189 related cluster n=1 Tax=unknown RepID=UPI0003D63189
tyrR; tyrosyl-tRNA synthetase
L2_013_000G1_scaffold_105_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3276..4178
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=2 Tax=Clostridiales RepID=B0AB40_9FIRM
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDQ95823.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
LysR; transcriptional regulator
L2_013_000G1_scaffold_105_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4251..5708)
DNA (1458bp) protein (486aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB39_9FIRM
L2_013_000G1_scaffold_105_6
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5762..6226)
DNA (465bp) protein (155aa)
Iron dependent repressor DNA binding domain protein n=2 Tax=Clostridiales RepID=R5X5H7_9CLOT
Iron dependent repressor DNA binding domain protein {ECO:0000313|EMBL:CDA10010.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
iron-dependent transcription repressor
L2_013_000G1_scaffold_105_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6321..6581
DNA (261bp) protein (87aa)
FeoA domain protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB37_9FIRM
FeoA domain protein {ECO:0000313|EMBL:EDQ95820.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
feoA2; ferrous ion transport protein
L2_013_000G1_scaffold_105_8
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6597..8723
DNA (2127bp) protein (709aa)
UPI0003D64232 related cluster n=1 Tax=unknown RepID=UPI0003D64232
Uncharacterized protein {ECO:0000313|EMBL:ETI94396.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
feoB2; ferrous ion transport protein
L2_013_000G1_scaffold_105_9

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8914..9138
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ36182.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_013_000G1_scaffold_105_10
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9243..10127)
DNA (885bp) protein (295aa)
RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=B0AB34_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
sigA2; RNA polymerase sigma factor SigA2 (sigma-43)
L2_013_000G1_scaffold_105_11
unknown

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comp(10165..10260)
DNA (96bp) protein (32aa)

This feature has no annotations

L2_013_000G1_scaffold_105_12
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10363..10881)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X5I2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10015.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
uncharacterised protein
L2_013_000G1_scaffold_105_13
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11488..12813
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XFG5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11154.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L2_013_000G1_scaffold_105_14
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12885..14507)
DNA (1623bp) protein (541aa)
UPI0003D6619B related cluster n=1 Tax=unknown RepID=UPI0003D6619B
Uncharacterized protein {ECO:0000313|EMBL:ETI92872.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
hypothetical protein
L2_013_000G1_scaffold_105_15
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14510..15289)
DNA (780bp) protein (260aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB19_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDQ95802.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ABC transporter ATPase
L2_013_000G1_scaffold_105_16
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15309..16112)
DNA (804bp) protein (268aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Pyrroline-5-carboxylate reductase n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB18_9FIRM
proC1; pyrroline-5-carboxylate reductase
L2_013_000G1_scaffold_105_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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16311..17231
DNA (921bp) protein (307aa)
exopolyphosphatase (EC:3.6.1.40 3.6.1.11)
Ppx/GppA phosphatase family protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI90837.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
L2_013_000G1_scaffold_105_18
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17271..17882)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ95799.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
putative lipoprotein
L2_013_000G1_scaffold_105_19
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18077..19084)
DNA (1008bp) protein (336aa)
ABC transporter substrate-binding protein aliphatic sulfonates family n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y3A4_9CLOT
ABC transporter substrate-binding protein aliphatic sulfonates family {ECO:0000313|EMBL:CDA11147.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
aliphatic sulfonate ABC transporter substrate-binding protein
L2_013_000G1_scaffold_105_20
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19087..19812)
DNA (726bp) protein (242aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB14_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDQ95797.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ssuB; aliphatic sulfonates ABC transporter ATP-binding protein
L2_013_000G1_scaffold_105_21

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comp(19805..20575)
DNA (771bp) protein (257aa)
ABC transporter permease protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X8L1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETJ38709.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ssuC; sulfonates family ABC transporter permease
L2_013_000G1_scaffold_105_22
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21141..22730)
DNA (1590bp) protein (530aa)
ABC transporter, substrate-binding protein, QAT family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB12_9FIRM
ABC transporter, substrate-binding protein, QAT family {ECO:0000313|EMBL:EDQ95795.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
binding--dependent transport system inner membrane component family protein
L2_013_000G1_scaffold_105_23
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22735..23871)
DNA (1137bp) protein (379aa)
opuCA; glycine betaine/carnitine/choline ABC transporter ATP-binding protein (EC:3.6.3.-)
Glycine betaine/L-proline transport ATP binding subunit n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB11_9FIRM
Glycine betaine/L-proline transport ATP binding subunit {ECO:0000313|EMBL:EDQ95794.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L2_013_000G1_scaffold_105_24
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24283..24948)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ95793.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L2_013_000G1_scaffold_105_25
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24991..26055)
DNA (1065bp) protein (355aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Clostridiales RepID=B0AB09_9FIRM
L2_013_000G1_scaffold_105_26
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26132..27256)
DNA (1125bp) protein (375aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
RIP metalloprotease RseP n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB08_9FIRM
putative membrane-associated zinc metalloprotease
L2_013_000G1_scaffold_105_27
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27269..28420)
DNA (1152bp) protein (384aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB07_9FIRM
L2_013_000G1_scaffold_105_28
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28571..29350)
DNA (780bp) protein (260aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
Phosphatidate cytidylyltransferase n=2 Tax=Clostridiales RepID=B0AB06_9FIRM
sA; phosphatidate cytidylyltransferase
L2_013_000G1_scaffold_105_29
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29362..30093)
DNA (732bp) protein (244aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Isoprenyl transferase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AB05_9FIRM
undecaprenyl pyrophosphate synthase
L2_013_000G1_scaffold_105_30
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30122..30325)
DNA (204bp) protein (68aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0AB04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11136.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
Displaying items 1-30 of 122 in total

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