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L2_013_000G1_scaffold_227

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Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_227_1
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(161..1597)
DNA (1437bp) protein (479aa)
Signal recognition particle protein n=37 Tax=Lactobacillus casei group RepID=K0NB27_LACCA
Signal recognition particle, subunit Ffh SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
L2_013_000G1_scaffold_227_2
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1610..1951)
DNA (342bp) protein (114aa)
UPF0122 protein LSEI_1603 n=55 Tax=Lactobacillus casei group RepID=Y1603_LACC3
Signal recognition particle associated protein
UPF0122 protein Lpp43_12541 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_227_3
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2578..2754
DNA (177bp) protein (59aa)
Uncharacterized protein n=3 Tax=Lactobacillus paracasei RepID=C2FEF3_LACPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC15612.1}; TaxID=1256230 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. tolerans Lpl7.;"
L2_013_000G1_scaffold_227_4
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2781..3095
DNA (315bp) protein (105aa)
Uncharacterized protein n=56 Tax=Lactobacillus casei group RepID=C5F3R9_LACPA
Integral membrane protein, putative
Putative integral membrane protein {ECO:0000313|EMBL:EKQ11602.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
L2_013_000G1_scaffold_227_5
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3163..4158)
DNA (996bp) protein (332aa)
Signal recognition particle receptor FtsY n=8 Tax=Lactobacillus casei group RepID=Q038J3_LACC3
cell division protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
L2_013_000G1_scaffold_227_6
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4158..7712)
DNA (3555bp) protein (1185aa)
Chromosome partition protein Smc n=18 Tax=Lactobacillus casei group RepID=K0N5H9_LACCA
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
chromosome segregation protein SMC
L2_013_000G1_scaffold_227_7
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7730..8425)
DNA (696bp) protein (232aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1051657 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei M36.;"
Ribonuclease 3 n=36 Tax=Lactobacillus casei group RepID=B3WEV0_LACCB
L2_013_000G1_scaffold_227_8
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8642..10435)
DNA (1794bp) protein (598aa)
Oligopeptide ABC trasporter substrate binding protein n=13 Tax=Lactobacillus casei group RepID=B3WEV1_LACCB
Oligopeptide-binding protein oppA {ECO:0000313|EMBL:EPC55384.1}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
Oligopeptide ABC transporter substrate-binding protein
L2_013_000G1_scaffold_227_9
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10629..11537)
DNA (909bp) protein (303aa)
Oligopeptide transport system permease protein oppC n=17 Tax=Lactobacillus casei group RepID=K0MW34_LACCA
Oligopeptide/dipeptide ABC superfamily ATP binding cassette transporter, permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:EEI67717.1}; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
L2_013_000G1_scaffold_227_10
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11554..12516)
DNA (963bp) protein (321aa)
ABC-type dipeptide/oligopeptide/nickel transport system n=54 Tax=Lactobacillus RepID=C5F3S5_LACPA
oligopeptide transport system permease OppB
Oligopeptide transport system permease protein oppB {ECO:0000313|EMBL:EPC85501.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_227_11
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12516..13469)
DNA (954bp) protein (318aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEI67715.1}; EC=3.6.3.24 {ECO:0000313|EMBL:EEI67715.1};; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
Oligopeptide transport ATP-binding protein OppF n=18 Tax=Lactobacillus casei group RepID=K0N5I3_LACCA
ABC transporter ATP-binding protein
L2_013_000G1_scaffold_227_12
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13473..14495)
DNA (1023bp) protein (341aa)
Oligopeptide ABC transporter ATP-binding protein n=44 Tax=Lactobacillus casei group RepID=B3WEV6_LACCB
appD; ABC transporter ATP-binding protein
Oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:EPC37315.1}; TaxID=1256225 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp225.;"
L2_013_000G1_scaffold_227_13
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14945..15187)
DNA (243bp) protein (81aa)
Acyl carrier protein n=54 Tax=Lactobacillus casei group RepID=K0N988_LACCA
Acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
L2_013_000G1_scaffold_227_14
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15241..16266)
DNA (1026bp) protein (342aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
Phosphate acyltransferase n=15 Tax=Lactobacillus casei group RepID=PLSX_LACC3
plsX; fatty acid/phospholipid synthesis protein PlsX
L2_013_000G1_scaffold_227_15
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16288..18444)
DNA (2157bp) protein (719aa)
ATP-dependent DNA helicase recG n=17 Tax=Lactobacillus casei group RepID=K0N5S7_LACCA
DNA helicase RecG {ECO:0000313|EMBL:BAN71834.1}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
DNA helicase RecG
L2_013_000G1_scaffold_227_16
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18477..20153)
DNA (1677bp) protein (559aa)
Dihydroxyacetone kinase related enzyme n=16 Tax=Lactobacillus casei group RepID=B3WEW0_LACCB
Uncharacterized protein {ECO:0000313|EMBL:EPC56165.1}; TaxID=1256201 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp123.;"
Dak phosphatase
L2_013_000G1_scaffold_227_17
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20213..20575)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei ATCC 25302 RepID=C2FF50_LACPA
hypothetical protein
General stress protein, Gls24 family {ECO:0000313|EMBL:EPC15626.1}; TaxID=1256230 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. tolerans Lpl7.;"
L2_013_000G1_scaffold_227_18
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


21079..21264
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=56 Tax=Lactobacillus casei group RepID=RL28_LACC3
LSU ribosomal protein L28p
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_227_19
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21707..22375)
DNA (669bp) protein (223aa)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:CCK22746.1}; EC=2.7.6.2 {ECO:0000313|EMBL:CCK22746.1};; TaxID=1215914 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei W56.;"
Thiamin pyrophosphokinase n=9 Tax=Lactobacillus casei group RepID=B3WEW3_LACCB
thiamine diphosphokinase
L2_013_000G1_scaffold_227_20
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22372..23022)
DNA (651bp) protein (217aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1435038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 0644.;"
Ribulose-phosphate 3-epimerase n=45 Tax=Lactobacillus casei group RepID=K0N5T1_LACCA
Ribulose-phosphate 3-epimerase
L2_013_000G1_scaffold_227_21
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23095..24000)
DNA (906bp) protein (302aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1256230 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. tolerans Lpl7.;"
Putative ribosome biogenesis GTPase RsgA n=20 Tax=Lactobacillus casei group RepID=B3WEW5_LACCB
Ribosome small subunit-stimulated GTPase EngC
L2_013_000G1_scaffold_227_22
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23997..25997)
DNA (2001bp) protein (667aa)
Serine/threonine protein kinase n=3 Tax=Lactobacillus casei group RepID=K6S1F4_LACCA
Serine/threonine protein kinase with beta-lactam (PASTA) domains {ECO:0000313|EMBL:EPC15631.1}; TaxID=1256230 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. tolerans Lpl7.;"
serine/threonine protein kinase with beta-lactam (PASTA) domains
L2_013_000G1_scaffold_227_23
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25994..26737)
DNA (744bp) protein (248aa)
Serine/threonine protein phosphatase n=43 Tax=Lactobacillus casei group RepID=C5F3T9_LACPA
serine/threonine protein phosphatase
Serine/threonine protein phosphatase {ECO:0000313|EMBL:EKQ09961.1}; TaxID=1051657 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei M36.;"
L2_013_000G1_scaffold_227_24
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26747..28087)
DNA (1341bp) protein (447aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
RNA methyltransferase n=4 Tax=Lactobacillus paracasei subsp. paracasei RepID=S6C085_LACPA
16S rRNA methyltransferase
L2_013_000G1_scaffold_227_25
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28074..29030)
DNA (957bp) protein (319aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
Methionyl-tRNA formyltransferase n=19 Tax=Lactobacillus casei group RepID=FMT_LACCB
Methionyl-tRNA formyltransferase
L2_013_000G1_scaffold_227_26
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29098..31476)
DNA (2379bp) protein (793aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1051659 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei UCD174.;"
Primosomal replication protein N (Factor Y) n=8 Tax=Lactobacillus casei group RepID=B3WEX0_LACCB
priA; DNA replication factor Y
L2_013_000G1_scaffold_227_27
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31520..32719)
DNA (1200bp) protein (400aa)
Phosphopantothenoylcysteinesynthetase/ decarboxyla se (EC 6.3.2.5) n=10 Tax=Lactobacillus casei group RepID=B3WEX1_LACCB
Pantothenate metabolism flavoprotein Dfp
Phosphopantothenoylcysteinesynthetase/ decarboxyla se {ECO:0000313|EMBL:GAN42849.1}; TaxID=1435040 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 1981.;"
L2_013_000G1_scaffold_227_28
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32866..33114)
DNA (249bp) protein (83aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
DNA-directed RNA polymerase subunit omega n=53 Tax=Lactobacillus casei group RepID=RPOZ_LACC3
DNA-directed RNA polymerase subunit K/omega
L2_013_000G1_scaffold_227_29
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33181..33807)
DNA (627bp) protein (209aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
Guanylate kinase n=52 Tax=Lactobacillus casei group RepID=K0N5J6_LACCA
Guanylate kinase
L2_013_000G1_scaffold_227_30
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33874..34560)
DNA (687bp) protein (229aa)
Predicted esterase of the alpha-beta hydrolase superfamily n=18 Tax=Lactobacillus casei group RepID=Q038G8_LACC3
alpha/beta hydrolase
Alpha/beta hydrolase {ECO:0000313|EMBL:KGP69152.1}; TaxID=1582 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei.;"
Displaying items 1-30 of 97 in total

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