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L2_013_000G1_scaffold_342

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_342_1
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(185..277)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6SPQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC48572.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L2_013_000G1_scaffold_342_2
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

768..1181
DNA (414bp) protein (138aa)
UPI00030FDB73 related cluster n=1 Tax=unknown RepID=UPI00030FDB73
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:CDE23565.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
PTS system transporter subunit IIB
L2_013_000G1_scaffold_342_3
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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1197..1853
DNA (657bp) protein (219aa)
3-keto-L-gulonate-6-phosphate decarboxylase n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2SHH8_9ENTE
Orotidine 5'-phosphate decarboxylase
3-keto-L-gulonate-6-phosphate decarboxylase {ECO:0000313|EMBL:EOH94735.1}; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus pallens ATCC BAA-351.;"
L2_013_000G1_scaffold_342_4
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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1983..3083
DNA (1101bp) protein (367aa)
Osmosensitive K+ channel His kinase sensor domain protein n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R869_THETN
KdpD2; osmosensitive K+ channel histidine kinase sensor subunit
Osmosensitive K+ channel His kinase sensor domain protein {ECO:0000313|EMBL:AAM25317.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 /; JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis).;"
L2_013_000G1_scaffold_342_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3161..4546)
DNA (1386bp) protein (462aa)
Dihydropyrimidinase n=2 Tax=Lachnospiraceae RepID=F7JU53_9FIRM
Dihydropyrimidinase {ECO:0000313|EMBL:ETD18146.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
PyrC; dihydroorotase
L2_013_000G1_scaffold_342_6
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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4842..8423
DNA (3582bp) protein (1194aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EQP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA99121.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_013_000G1_scaffold_342_7
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8510..8782)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D567_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG53522.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L2_013_000G1_scaffold_342_8
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8978..10213
DNA (1236bp) protein (412aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000313|EMBL:CBK76445.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
DNA polymerase IV n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFH1_CLOSC
L2_013_000G1_scaffold_342_9
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10210..10527
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFH2_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK76446.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_013_000G1_scaffold_342_10
unknown

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10497..10613
DNA (117bp) protein (39aa)

This feature has no annotations

L2_013_000G1_scaffold_342_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10619..11293
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C9Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23825.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
serine/threonine protein phosphatase
L2_013_000G1_scaffold_342_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11323..12279
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW15_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93853.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L2_013_000G1_scaffold_342_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12331..13695
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TV34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67149.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metallopeptidase (DUF2201).
L2_013_000G1_scaffold_342_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13664..15175
DNA (1512bp) protein (504aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW17_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93855.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ATPase family associated with various cellular activities (AAA).
L2_013_000G1_scaffold_342_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15256..15891
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23826.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Uncharacterised ACR, YkgG family COG1556.
L2_013_000G1_scaffold_342_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15907..16704
DNA (798bp) protein (266aa)
Sortase, SrtB family n=1 Tax=Clostridium sp. D5 RepID=F0YW21_9CLOT
Sortase, SrtB family {ECO:0000313|EMBL:EGB93859.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
sortase, SrtB family
L2_013_000G1_scaffold_342_17
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16705..16893
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB85391.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
hypothetical protein
L2_013_000G1_scaffold_342_18
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17016..17303
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=1 Tax=Clostridium sp. ASF502 RepID=N1ZZG3_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
SSU ribosomal protein S6P
L2_013_000G1_scaffold_342_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17318..17761
DNA (444bp) protein (148aa)
Single-stranded DNA-binding protein n=5 Tax=Clostridiales RepID=A5KQP9_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
single-strand binding protein
L2_013_000G1_scaffold_342_20
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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17787..18053
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5Y182_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
SSU ribosomal protein S18P
L2_013_000G1_scaffold_342_21
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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18165..19943
DNA (1779bp) protein (593aa)
Ig domain protein (Fragment) n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2P7A3_9FIRM
Ig domain protein {ECO:0000313|EMBL:ERK46380.1}; Flags: Fragment;; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
putative extracellular nuclease
L2_013_000G1_scaffold_342_22
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20047..21273)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LCH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET61643.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L2_013_000G1_scaffold_342_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21438..21776
DNA (339bp) protein (113aa)
Dihydrodipicolinate reductase domain protein {ECO:0000313|EMBL:EDY34006.1}; EC=1.17.1.8 {ECO:0000313|EMBL:EDY34006.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
dapB2; dihydrodipicolinate reductase DapB2 (EC:1.3.1.26)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H9S7_9FIRM
L2_013_000G1_scaffold_342_24
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21881..23449
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A3Z4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37820.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L2_013_000G1_scaffold_342_25
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23439..24437)
DNA (999bp) protein (333aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E969_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CCX84701.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
hypothetical protein
L2_013_000G1_scaffold_342_26
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24434..25663)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RSL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD60274.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
two-component system, response regulator YesN
L2_013_000G1_scaffold_342_27
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25890..27395
DNA (1506bp) protein (502aa)
sugar ABC transporter ATPase n=1 Tax=Butyrivibrio sp. XPD2006 RepID=UPI0003B38304
ABC transporter related protein {ECO:0000313|EMBL:CCY34345.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC transporter-like protein
L2_013_000G1_scaffold_342_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27411..28394
DNA (984bp) protein (328aa)
Sugar ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I1S1_9FIRM
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CCY34344.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L2_013_000G1_scaffold_342_29
unknown

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28485..29696
DNA (1212bp) protein (404aa)

This feature has no annotations

L2_013_000G1_scaffold_342_30
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29759..30766
DNA (1008bp) protein (336aa)
Inner-membrane translocator n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HWY8_9FIRM
Inner-membrane translocator {ECO:0000313|EMBL:CCY34343.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
inner-membrane translocator
Displaying items 1-30 of 69 in total

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