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L2_013_000G1_scaffold_462

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_462_1
unknown

Not on your lists

comp(2..67)
DNA (66bp) protein (22aa)

This feature has no annotations

L2_013_000G1_scaffold_462_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(67..333)
DNA (267bp) protein (89aa)
Phosphocarrier protein HPr n=71 Tax=Lactobacillus RepID=PTHP_LACCA
ptsH; phosphocarrier protein HPr
Phosphocarrier protein HPr {ECO:0000313|EMBL:BAI42282.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L2_013_000G1_scaffold_462_3
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(477..668)
DNA (192bp) protein (64aa)
Uncharacterized protein n=48 Tax=Lactobacillus casei group RepID=C5F478_LACPA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC92165.1}; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
L2_013_000G1_scaffold_462_4
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1017..3113
DNA (2097bp) protein (699aa)
ATP-dependent Clp protease ATP-binding subunit n=32 Tax=Lactobacillus casei group RepID=C5F479_LACPA
ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones {ECO:0000313|EMBL:ABJ70534.1}; TaxID=321967 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei (strain ATCC 334).;"
Clp protease/DnaK/DnaJ chaperone ATP-binding subunit
L2_013_000G1_scaffold_462_5
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3234..3527
DNA (294bp) protein (98aa)
Uncharacterized protein n=48 Tax=Lactobacillus casei group RepID=C5F480_LACPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC87693.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_462_6
unknown

Not on your lists

comp(3469..3651)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp229 RepID=S2PBN2_LACPA
L2_013_000G1_scaffold_462_7
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3666..5240)
DNA (1575bp) protein (525aa)
Peptide chain release factor 3 n=9 Tax=Lactobacillus casei group RepID=RF3_LACC3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
prfC; peptide chain release factor 3
L2_013_000G1_scaffold_462_8
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5306..6646)
DNA (1341bp) protein (447aa)
Hemolysins related protein with CBS domains n=9 Tax=Lactobacillus casei group RepID=Q037T5_LACC3
hemolysin-like protein
Hemolysin-like protein {ECO:0000313|EMBL:EPC55246.1}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
L2_013_000G1_scaffold_462_9
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6722..7900)
DNA (1179bp) protein (393aa)
Predicted permease n=7 Tax=Lactobacillus casei group RepID=Q037T4_LACC3
permease
Putative transporter protein {ECO:0000313|EMBL:BAN71982.1}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
L2_013_000G1_scaffold_462_10
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7977..8411
DNA (435bp) protein (145aa)
GNAT family Acetyltransferase n=25 Tax=Lactobacillus casei group RepID=C5F484_LACPA
GNAT family acetyltransferase YjcF
GNAT family acetyltransferase {ECO:0000313|EMBL:ERN48310.1}; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
L2_013_000G1_scaffold_462_11
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8550..9068)
DNA (519bp) protein (173aa)
Uncharacterized protein n=9 Tax=Lactobacillus casei group RepID=Q037T2_LACC3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC54949.1}; TaxID=1256201 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp123.;"
L2_013_000G1_scaffold_462_12
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9096..9632)
DNA (537bp) protein (179aa)
Uncharacterized domain/protein associated with RNase G and E n=7 Tax=Lactobacillus casei group RepID=Q037T1_LACC3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC55242.1}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
L2_013_000G1_scaffold_462_13
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9882..10676)
DNA (795bp) protein (265aa)
Regulatory protein RecX n=20 Tax=Lactobacillus casei group RepID=C5F487_LACPA
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
RecX family regulatory protein
L2_013_000G1_scaffold_462_14
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10750..12285
DNA (1536bp) protein (512aa)
Uncharacterized protein n=9 Tax=Lactobacillus casei group RepID=Q037S8_LACC3
Uncharacterized protein {ECO:0000313|EMBL:EPC55240.1}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
hypothetical protein
L2_013_000G1_scaffold_462_15
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12279..12617)
DNA (339bp) protein (113aa)
Uncharacterized protein n=49 Tax=Lactobacillus casei group RepID=C5F489_LACPA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP68639.1}; TaxID=1318635 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei LOCK919.;"
L2_013_000G1_scaffold_462_16
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12731..14098
DNA (1368bp) protein (456aa)
23S rRNA m(5)U-1939 methyltransferase n=5 Tax=Lactobacillus casei group RepID=Q037S6_LACC3
tRNA (uracil-5-)-methyltransferase related enzyme
TrmA family RNA methyltransferase {ECO:0000313|EMBL:EKQ18457.1}; TaxID=1051659 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei UCD174.;"
L2_013_000G1_scaffold_462_17
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14383..14856
DNA (474bp) protein (158aa)
Nucleoside 2-deoxyribosyltransferase n=39 Tax=Lactobacillus casei group RepID=C5F491_LACPA
Nucleoside 2-deoxyribosyltransferase
Nucleoside deoxyribosyltransferase {ECO:0000313|EMBL:GAN37722.1}; TaxID=1435038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 0644.;"
L2_013_000G1_scaffold_462_18
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14940..15695)
DNA (756bp) protein (252aa)
Transcriptional regulator, GntR family n=3 Tax=Lactobacillus paracasei subsp. paracasei RepID=S2MK87_LACPA
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EPC38687.1}; TaxID=1256225 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp225.;"
GntR family transcriptional regulator
L2_013_000G1_scaffold_462_19
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15821..17257)
DNA (1437bp) protein (479aa)
6-phospho-beta-glucosidase (EC:3.2.1.- 3.2.1.86)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase n=37 Tax=Lactobacillus casei group RepID=C5F493_LACPA
6-phospho-beta-glucosidase {ECO:0000313|EMBL:EPC87679.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_462_20
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17310..18674)
DNA (1365bp) protein (455aa)
PTS system sugar-specific EII component n=30 Tax=Lactobacillus casei group RepID=C5F494_LACPA
PTS system, cellobiose-specific IIC component
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
L2_013_000G1_scaffold_462_21
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18697..19191)
DNA (495bp) protein (165aa)
Uncharacterized protein n=43 Tax=Lactobacillus casei group RepID=K0MWE4_LACCA
PTS system cellobiose-specific IIA component
Uncharacterized protein {ECO:0000313|EMBL:EPC87677.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_462_22
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19218..19535)
DNA (318bp) protein (106aa)
PTS system cellobiose-specific IIA component n=39 Tax=Lactobacillus casei group RepID=C5F457_LACPA
PTS system cellobiose-specific IIA component
PTS system cellobiose-specific transporter subunit IIA {ECO:0000313|EMBL:EPC87676.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L2_013_000G1_scaffold_462_23
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19545..19859)
DNA (315bp) protein (105aa)
Cellobiose PTS, EIIB n=51 Tax=Lactobacillus casei group RepID=B3W8R0_LACCB
PTS system, cellobiose-specific IIB component
Cellobiose-specific phosphotransferase enzyme IIB component {ECO:0000313|EMBL:EPC92185.1}; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
L2_013_000G1_scaffold_462_24
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20178..21932)
DNA (1755bp) protein (585aa)
Pyruvate oxidase n=36 Tax=Lactobacillus casei group RepID=K0NBB6_LACCA
Pyruvate oxidase {ECO:0000313|EMBL:EPC50728.1}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
Pyruvate oxidase
L2_013_000G1_scaffold_462_25
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22256..23422)
DNA (1167bp) protein (389aa)
Hydroxymethylglutaryl-CoA synthase {ECO:0000313|EMBL:ABJ70556.1}; EC=2.3.3.10 {ECO:0000313|EMBL:ABJ70556.1};; TaxID=321967 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei (strain ATCC 334).;"
Hydroxymethylglutaryl-CoA synthase n=11 Tax=Lactobacillus casei group RepID=Q037R6_LACC3
3-hydroxy-3-methylglutaryl CoA synthase
L2_013_000G1_scaffold_462_26
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23406..24686)
DNA (1281bp) protein (427aa)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.88 {ECO:0000256|RuleBase:RU361219};; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
Hydroxymethylglutaryl-CoA reductase n=27 Tax=Lactobacillus casei group RepID=D8GHP8_LACCZ
hydroxymethylglutaryl-CoA reductase
L2_013_000G1_scaffold_462_27
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24698..25879)
DNA (1182bp) protein (394aa)
Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase) n=30 Tax=Lactobacillus casei group RepID=B3W8R4_LACCB
atoB2; Acetyl-CoA C-acetyltransferase thil
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EPC92190.1}; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
L2_013_000G1_scaffold_462_28
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26224..26523
DNA (300bp) protein (100aa)
Uncharacterized protein n=53 Tax=Lactobacillus casei group RepID=C5F4F5_LACPA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKQ10895.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
L2_013_000G1_scaffold_462_29
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26524..27354)
DNA (831bp) protein (277aa)
Sugar phosphate isomerase/epimerase n=8 Tax=Lactobacillus casei group RepID=Q037R2_LACC3
sugar phosphate isomerase/epimerase
Uncharacterized protein {ECO:0000313|EMBL:EEI67534.1}; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
L2_013_000G1_scaffold_462_30
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27502..28119)
DNA (618bp) protein (206aa)
Restriction endonuclease n=1 Tax=Lactobacillus paracasei subsp. paracasei ATCC 25302 RepID=C2FEM4_LACPA
Restriction endonuclease {ECO:0000313|EMBL:EEI67533.1}; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
mrr family endonuclease
Displaying items 1-30 of 60 in total

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