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L2_013_000G1_scaffold_505

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_505_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(405..2171)
DNA (1767bp) protein (589aa)
Aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EFE59816.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFE59816.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Aspartate--tRNA ligase n=40 Tax=Staphylococcus epidermidis RepID=SYD_STAEQ
L2_013_000G1_scaffold_505_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(2174..3448)
DNA (1275bp) protein (425aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000255|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00127}; Short=HisRS {ECO:0000255|HAMAP-Rule:MF_00127};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Histidine--tRNA ligase n=51 Tax=Staphylococcus epidermidis RepID=SYH_STAEQ
L2_013_000G1_scaffold_505_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3820..4695)
DNA (876bp) protein (292aa)
LytH protein involved in methicillin resistance / N-acetylmuramoyl-L-alanine amidase domain (EC:3.5.1.28)
Probable cell wall amidase lytH {ECO:0000256|PIRNR:PIRNR037730}; EC=3.5.1.- {ECO:0000256|PIRNR:PIRNR037730};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Probable cell wall amidase lytH n=31 Tax=Staphylococcus epidermidis RepID=C5Q9P3_STAEP
L2_013_000G1_scaffold_505_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4692..5144)
DNA (453bp) protein (151aa)
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
D-tyrosyl-tRNA(Tyr) deacylase n=57 Tax=Staphylococcus epidermidis RepID=DTD_STAEQ
L2_013_000G1_scaffold_505_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5158..7347)
DNA (2190bp) protein (730aa)
GTP pyrophosphokinase , (p)ppGpp synthetase I (EC:2.7.6.5)
GTP pyrophosphokinase; EC=2.7.6.5;; (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
GTP pyrophosphokinase n=67 Tax=Staphylococcus epidermidis RepID=RELA_STAEQ
L2_013_000G1_scaffold_505_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7868..8386)
DNA (519bp) protein (173aa)
Adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Adenine phosphoribosyltransferase n=76 Tax=Staphylococcus epidermidis RepID=APT_STAEQ
L2_013_000G1_scaffold_505_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8405..10678)
DNA (2274bp) protein (758aa)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EFE59810.1}; EC=3.1.-.- {ECO:0000313|EMBL:EFE59810.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Single-stranded-DNA-specific exonuclease RecJ n=18 Tax=Staphylococcus epidermidis RepID=D4FII0_STAEP
recJ; single-stranded-DNA-specific exonuclease RecJ
L2_013_000G1_scaffold_505_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11422..13713)
DNA (2292bp) protein (764aa)
Export membrane protein SecD n=17 Tax=Staphylococcus epidermidis RepID=D4FIH9_STAEP
Export membrane protein SecD {ECO:0000313|EMBL:EFE59898.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
secD; export membrane protein SecD
L2_013_000G1_scaffold_505_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14052..14312)
DNA (261bp) protein (87aa)
Preprotein translocase, YajC subunit n=70 Tax=Staphylococcus epidermidis RepID=Q5HNR3_STAEQ
Preprotein translocase subunit YajC (TC 3.A.5.1.1)
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFE59897.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_013_000G1_scaffold_505_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14328..15467)
DNA (1140bp) protein (380aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00168}; EC=2.4.2.29 {ECO:0000255|HAMAP-Rule:MF_00168};; Guanine insertion enzyme {ECO:0000255|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000255|HAMAP-Rule:MF_00168}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Queuine tRNA-ribosyltransferase n=46 Tax=Staphylococcus epidermidis RepID=TGT_STAEQ
L2_013_000G1_scaffold_505_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15488..16552)
DNA (1065bp) protein (355aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Staphylococcus epidermidis RepID=D4FIH6_STAEP
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
L2_013_000G1_scaffold_505_12
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16515..17519)
DNA (1005bp) protein (335aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Holliday junction ATP-dependent DNA helicase RuvB n=46 Tax=Staphylococcus epidermidis RepID=RUVB_STAEQ
Holliday junction DNA helicase RuvB
L2_013_000G1_scaffold_505_13
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17533..18135)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Holliday junction ATP-dependent DNA helicase RuvA n=54 Tax=Staphylococcus epidermidis RepID=RUVA_STAEQ
Holliday junction DNA helicase RuvA
L2_013_000G1_scaffold_505_14
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18148..18612)
DNA (465bp) protein (155aa)
UPF0735 ACT domain-containing protein HMPREF0789_1329 n=3 Tax=Staphylococcus epidermidis RepID=C5Q9Q5_STAEP
hypothetical protein
UPF0735 ACT domain-containing protein Q614_SASC00199G0002 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L2_013_000G1_scaffold_505_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18615..19907)
DNA (1293bp) protein (431aa)
GTPase Obg n=42 Tax=Staphylococcus epidermidis RepID=OBG_STAES
obgE; GTPase ObgE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_013_000G1_scaffold_505_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(20053..20337)
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=86 Tax=Staphylococcus RepID=RL27_STAEQ
LSU ribosomal protein L27p
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_013_000G1_scaffold_505_17
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20349..20669)
DNA (321bp) protein (107aa)
Uncharacterized protein n=78 Tax=Staphylococcus epidermidis RepID=Q5HNQ5_STAEQ
Potential ribosomal protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ14777.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L2_013_000G1_scaffold_505_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(20674..20982)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=81 Tax=Staphylococcus epidermidis RepID=RL21_STAEQ
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_013_000G1_scaffold_505_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21104..21625)
DNA (522bp) protein (174aa)
Rod shape-determining protein MreD, putative n=50 Tax=Staphylococcus epidermidis RepID=Q5HNQ3_STAEQ
mreD; rod shape-determining protein MreD
Rod shape-determining protein MreD, putative {ECO:0000313|EMBL:AAW54605.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_013_000G1_scaffold_505_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21625..22464)
DNA (840bp) protein (280aa)
Cell shape-determining protein MreC n=32 Tax=Staphylococcus epidermidis RepID=C5Q9R1_STAEP
Rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_013_000G1_scaffold_505_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22871..23011)
DNA (141bp) protein (47aa)
Uncharacterized protein n=53 Tax=Staphylococcus epidermidis RepID=Q5HNQ1_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54551.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_013_000G1_scaffold_505_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23095..23580)
DNA (486bp) protein (162aa)
Uncharacterized protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HNQ0_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59884.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_013_000G1_scaffold_505_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23745..23924
DNA (180bp) protein (60aa)
Uncharacterized protein n=50 Tax=Staphylococcus epidermidis RepID=Q5HNP9_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54553.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_013_000G1_scaffold_505_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23988..24653)
DNA (666bp) protein (222aa)
UPF0758 protein SE_1336 n=44 Tax=Staphylococcus epidermidis RepID=Y1336_STAES
DNA repair protein RadC
UPF0758 protein SE_1336; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_013_000G1_scaffold_505_25

Not on your lists

comp(24665..25375)
DNA (711bp) protein (237aa)
Type IV prepilin peptidase n=35 Tax=Staphylococcus epidermidis RepID=Q8CNZ3_STAES
Late competence protein ComC, processing protease
A24 family peptidase {ECO:0000313|EMBL:ETJ18379.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_013_000G1_scaffold_505_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25559..26824)
DNA (1266bp) protein (422aa)
Bifunctional protein FolC {ECO:0000313|EMBL:EFE59880.1}; EC=6.3.2.17 {ECO:0000313|EMBL:EFE59880.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Folylpolyglutamate synthase/dihydrofolate synthase n=43 Tax=Staphylococcus epidermidis RepID=Q5HNP0_STAEQ
folC; bifunctional FolC family protein
L2_013_000G1_scaffold_505_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(26835..29465)
DNA (2631bp) protein (877aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=38 Tax=Staphylococcus epidermidis RepID=SYV_STAEQ
L2_013_000G1_scaffold_505_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29769..30368
DNA (600bp) protein (200aa)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:EFE59878.1}; EC=3.2.2.20 {ECO:0000313|EMBL:EFE59878.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA-3-methyladenine glycosylase (EC:3.2.2.20)
Methyladenine glycosylase n=1 Tax=Staphylococcus epidermidis VCU123 RepID=H3VVV3_STAEP
L2_013_000G1_scaffold_505_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30535..31554)
DNA (1020bp) protein (340aa)
Membrane protein, putative n=40 Tax=Staphylococcus epidermidis RepID=Q5HNN7_STAEQ
hypothetical protein
Putative membrane protein AbrB {ECO:0000313|EMBL:EFE59877.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_013_000G1_scaffold_505_30

Not on your lists

comp(32010..33296)
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=5 Tax=Staphylococcus epidermidis RepID=H3UCM5_STAEP
Glutamate-1-semialdehyde 2,1-aminomutase 1 {ECO:0000313|EMBL:ETJ18384.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying items 1-30 of 56 in total

View Taxonomy