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L2_013_000G1_scaffold_542

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_542_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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107..445
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUL8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF39256.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L2_013_000G1_scaffold_542_2
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

604..870
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MX92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS75301.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L2_013_000G1_scaffold_542_3
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

873..1349
DNA (477bp) protein (159aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF39257.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L2_013_000G1_scaffold_542_4
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1346..1660
DNA (315bp) protein (105aa)
Bacterial mobilization protein MobC n=2 Tax=Clostridiales RepID=B6FQ20_9CLOT
Bacterial mobilization protein (MobC) {ECO:0000313|EMBL:KJF39258.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Bacterial mobilisation protein (MobC)./Ribbon-helix-helix protein, copG family.
L2_013_000G1_scaffold_542_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1654..2406
DNA (753bp) protein (251aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF39259.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L2_013_000G1_scaffold_542_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2410..3330
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WNS2_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:KJF39260.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Relaxase/Mobilisation nuclease domain.
L2_013_000G1_scaffold_542_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3419..3733
DNA (315bp) protein (105aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF39262.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L2_013_000G1_scaffold_542_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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3856..4575
DNA (720bp) protein (240aa)
Phosphoadenosine phosphosulfate reductase family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUM6_9CLOT
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase {ECO:0000313|EMBL:KJF39298.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
L2_013_000G1_scaffold_542_9

Not on your lists

4572..5372
DNA (801bp) protein (267aa)
WGR domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1T5N9_9ZZZZ
WGR domain protein {ECO:0000313|EMBL:EKC64973.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_013_000G1_scaffold_542_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5392..5703
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YTK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO23717.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_013_000G1_scaffold_542_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5879..7648
DNA (1770bp) protein (590aa)
TraG/TraD family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUM7_9CLOT
TraG/TraD family protein {ECO:0000313|EMBL:EDO60677.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Type IV secretory pathway, VirD4 components
L2_013_000G1_scaffold_542_12
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7629..7964
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HHN6_9FIRM
Glutamyl-tRNA amidotransferase {ECO:0000313|EMBL:KJF39263.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L2_013_000G1_scaffold_542_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8001..8837
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KMZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39264.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L2_013_000G1_scaffold_542_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8859..9239
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUN2_9CLOT
Glutamyl-tRNA synthetase {ECO:0000313|EMBL:KJF39265.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L2_013_000G1_scaffold_542_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9236..11575
DNA (2340bp) protein (780aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUN4_9CLOT
TraE family protein {ECO:0000313|EMBL:KJF39266.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Domain of unknown function DUF87.
L2_013_000G1_scaffold_542_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11630..11836)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39267.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L2_013_000G1_scaffold_542_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11882..12487)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99537.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_013_000G1_scaffold_542_18
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12511..13194)
DNA (684bp) protein (228aa)
Peptidase S24-like protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6BJ54_9CLOT
Peptidase S24-like protein {ECO:0000313|EMBL:CDA53387.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Predicted transcriptional regulator
L2_013_000G1_scaffold_542_19
unknown

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comp(13201..13695)
DNA (495bp) protein (165aa)

This feature has no annotations

L2_013_000G1_scaffold_542_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13857..15656
DNA (1800bp) protein (600aa)
RNA-directed DNA polymerase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZES6_EUBR3
RNA-directed DNA polymerase
RNA-directed DNA polymerase {ECO:0000313|EMBL:ACR74592.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_013_000G1_scaffold_542_21
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15709..16950
DNA (1242bp) protein (414aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWJ9_9FIRM
L2_013_000G1_scaffold_542_22
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16963..17217
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99535.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_013_000G1_scaffold_542_23
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17254..17607)
DNA (354bp) protein (118aa)
Helix-turn-helix n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8G3_9FIRM
XRE family transcriptional regulator {ECO:0000313|EMBL:KJF39299.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Helix-turn-helix.
L2_013_000G1_scaffold_542_24
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17818..18966
DNA (1149bp) protein (383aa)
Metallo-beta-lactamase domain protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5E7_BLAHA
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEX22379.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
Predicted hydrolase (metallo-beta-lactamase superfamily)
L2_013_000G1_scaffold_542_25
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19046..20761
DNA (1716bp) protein (572aa)
Peptidase M23 family n=2 Tax=root RepID=R6QMS6_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDC37918.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L2_013_000G1_scaffold_542_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21415..22437)
DNA (1023bp) protein (341aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKC2_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB76843.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
AraC-type DNA-binding domain-containing proteins
L2_013_000G1_scaffold_542_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22502..23965
DNA (1464bp) protein (488aa)
Glycosyl hydrolase, family 43 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKC3_9FIRM
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EFB76844.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
beta-xylosidase
L2_013_000G1_scaffold_542_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23978..25102
DNA (1125bp) protein (375aa)
GDSL-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKC4_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EFB76845.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
lipoprotein
L2_013_000G1_scaffold_542_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25105..25845
DNA (741bp) protein (247aa)
Polysaccharide deacetylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKC5_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:EFB76846.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted xylanase/chitin deacetylase
L2_013_000G1_scaffold_542_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25859..28258
DNA (2400bp) protein (800aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKC6_9FIRM
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EFB76847.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Beta-galactosidase/beta-glucuronidase
Displaying items 1-30 of 54 in total

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