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L2_013_000G1_scaffold_560

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_560_1
Treponema phagedenis, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(116..1027)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Treponema phagedenis F0421 RepID=E7NXH2_TREPH
Uncharacterized protein {ECO:0000313|EMBL:CEM63255.1}; TaxID=162 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema phagedenis.;"
putative esterase
L2_013_000G1_scaffold_560_2
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1738..2274)
DNA (537bp) protein (179aa)
TraG/TraD family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EXM9_CLOS4
TraG/TraD family protein {ECO:0000313|EMBL:ERI99597.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Type IV secretory pathway, VirD4 components
L2_013_000G1_scaffold_560_3
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2566..2943)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RX17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC47556.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L2_013_000G1_scaffold_560_4
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2964..3623)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BC78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81846.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Crp/Fnr family transcriptional regulator
L2_013_000G1_scaffold_560_5
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3692..4222)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS75398.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
hypothetical protein
L2_013_000G1_scaffold_560_6
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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comp(4226..4627)
DNA (402bp) protein (134aa)
Polyketide cyclase / dehydrase and lipid transport n=1 Tax=Firmicutes bacterium CAG:308 RepID=R6ZPY4_9FIRM
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:CDD50563.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
Polyketide cyclase / dehydrase and lipid transport.
L2_013_000G1_scaffold_560_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4728..5255)
DNA (528bp) protein (176aa)
Riboflavin biosynthesis protein RibD C-terminal domain protein n=5 Tax=Clostridiales RepID=A5KP12_9FIRM
Dihydrofolate reductase {ECO:0000313|EMBL:EFV19347.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Dihydrofolate reductase
L2_013_000G1_scaffold_560_8
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5290..6060)
DNA (771bp) protein (257aa)
Cytidine and deoxycytidylate deaminase zinc-binding region n=4 Tax=Lachnospiraceae RepID=A5KJ88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88825.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
cytidine deaminase
L2_013_000G1_scaffold_560_9
Succinatimonas hippei, Succinatimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6305..6748)
DNA (444bp) protein (148aa)
Acetyltransferase, GNAT family n=1 Tax=Succinatimonas hippei YIT 12066 RepID=E8LKT7_9GAMM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFY06851.1}; TaxID=762983 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinatimonas.;" source="Succinatimonas hippei YIT 12066.;"
Predicted P-loop ATPase fused to an acetyltransferase
L2_013_000G1_scaffold_560_10
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6755..7264)
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NF25_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35857.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Polyketide cyclase / dehydrase and lipid transport.
L2_013_000G1_scaffold_560_11
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8281..9222
DNA (942bp) protein (314aa)
4Fe-4S binding domain n=3 Tax=Coprococcus RepID=D5HIA4_9FIRM
4Fe-4S binding domain.
4Fe-4S binding domain {ECO:0000313|EMBL:CCZ92582.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
L2_013_000G1_scaffold_560_12
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9290..11506)
DNA (2217bp) protein (739aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K7A8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS39352.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L2_013_000G1_scaffold_560_13
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(11503..12267)
DNA (765bp) protein (255aa)
Putative bacteriocin export ABC transporter lactococcin 972 group n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EQR9_9FIRM
Putative bacteriocin export ABC transporter lactococcin 972 group {ECO:0000313|EMBL:CDB02943.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_013_000G1_scaffold_560_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12435..13418)
DNA (984bp) protein (328aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I858_9FIRM
L2_013_000G1_scaffold_560_15
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13475..14170)
DNA (696bp) protein (232aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=A7VX13_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EDO60310.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_000G1_scaffold_560_16
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14185..14745)
DNA (561bp) protein (187aa)
Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE n=2 Tax=Lachnospiraceae RepID=C9LCD7_BLAHA
Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE {ECO:0000313|EMBL:EEX20361.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L2_013_000G1_scaffold_560_17
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14811..15569)
DNA (759bp) protein (253aa)
ABC transporter, ATP-binding protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LCD9_BLAHA
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEX20363.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
ABC transporter
L2_013_000G1_scaffold_560_18
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15563..16627)
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AGY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81416.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
transport system permease
L2_013_000G1_scaffold_560_19
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16599..17756)
DNA (1158bp) protein (386aa)
Periplasmic binding protein n=2 Tax=Lachnospiraceae RepID=C9LCE1_BLAHA
Periplasmic binding protein {ECO:0000313|EMBL:EEX20365.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
Fe3+-siderophore ABC transporter periplasmic Fe3+-siderophore-binding protein
L2_013_000G1_scaffold_560_20
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(17895..18788)
DNA (894bp) protein (298aa)
Transcriptional regulator LysR family n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HI80_9FIRM
Transcriptional regulator LysR family {ECO:0000313|EMBL:CCY27834.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
LysR family transcriptional regulator
L2_013_000G1_scaffold_560_21
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18948..19592
DNA (645bp) protein (215aa)
putative acetyltransferase (EC:2.3.1.-)
Putative maltose O-acetyltransferase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q646_9CLOT
Putative maltose O-acetyltransferase {ECO:0000313|EMBL:EKY23464.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
L2_013_000G1_scaffold_560_22
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19727..20431)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BWZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75597.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L2_013_000G1_scaffold_560_23
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20448..21191)
DNA (744bp) protein (248aa)
4-carboxymuconolactone decarboxylase n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JBW7_9FIRM
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EOS31603.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
Uncharacterized conserved protein, contains double-stranded beta-helix domain
L2_013_000G1_scaffold_560_24
unknown

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comp(21322..21543)
DNA (222bp) protein (74aa)

This feature has no annotations

L2_013_000G1_scaffold_560_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21769..22464)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAT4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31402.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L2_013_000G1_scaffold_560_26
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22603..23136)
DNA (534bp) protein (178aa)
Flavin reductase {ECO:0000313|EMBL:EEG31403.1}; EC=1.7.-.- {ECO:0000313|EMBL:EEG31403.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Flavin reductase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAT5_9CLOT
Multimeric flavodoxin WrbA
L2_013_000G1_scaffold_560_27
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23169..23531)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JR10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE66071.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
hypothetical protein
L2_013_000G1_scaffold_560_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23548..24339)
DNA (792bp) protein (264aa)
Esterase/lipase n=2 Tax=Faecalibacterium prausnitzii RepID=D4K5I7_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL02846.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L2_013_000G1_scaffold_560_29
Lactobacillus pentosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(24398..24889)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Lactobacillus pentosus MP-10 RepID=F6IZA3_LACPE
Uncharacterized protein {ECO:0000313|EMBL:CCB84029.1}; TaxID=1028490 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus pentosus MP-10.;"
L2_013_000G1_scaffold_560_30
Lactobacillus pentosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24953..25225)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Lactobacillus pentosus MP-10 RepID=F6IZA3_LACPE
Uncharacterized protein {ECO:0000313|EMBL:CCB84029.1}; TaxID=1028490 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus pentosus MP-10.;"
alpha/beta hydrolase
Displaying items 1-30 of 61 in total

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