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L2_013_000G1_scaffold_602

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_602_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..630)
DNA (630bp) protein (210aa)
Phage antirepressor KilAC domain protein (Fragment) n=1 Tax=Clostridium difficile P42 RepID=T4PQ20_CLODI
BRO family protein {ECO:0000313|EMBL:EHJ25450.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L2_013_000G1_scaffold_602_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(750..1523)
DNA (774bp) protein (258aa)
Phage regulatory protein, Rha family n=13 Tax=Clostridium difficile RepID=G6BNP7_CLODI
Phage regulatory protein, Rha family {ECO:0000313|EMBL:EHJ25449.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L2_013_000G1_scaffold_602_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1554..1769)
DNA (216bp) protein (72aa)
Uncharacterized protein n=17 Tax=Clostridium difficile RepID=G6BNP6_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQE66020.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_000G1_scaffold_602_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1950..2495
DNA (546bp) protein (182aa)
Helix-turn-helix family protein n=2 Tax=Clostridium difficile RepID=T4PPP1_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQI00403.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
phage regulatory protein
L2_013_000G1_scaffold_602_5
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2512..3642
DNA (1131bp) protein (377aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PIS9_CLODI
protein of unknown function DUF262
Uncharacterized protein {ECO:0000313|EMBL:AKA71490.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L2_013_000G1_scaffold_602_6
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3611..4423
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P42 RepID=T4PQ15_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA71491.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L2_013_000G1_scaffold_602_7
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4511..6019
DNA (1509bp) protein (503aa)
Eco57I restriction-modification methylase family protein n=2 Tax=Clostridium difficile RepID=T4PQS7_CLODI
Site-specific modification DNA-methyltransferase {ECO:0000313|EMBL:CEN31005.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
modification methylase BsuBI
L2_013_000G1_scaffold_602_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6111..6617
DNA (507bp) protein (169aa)
Translation initiation factor IF-2 family protein n=98 Tax=Clostridium difficile RepID=T2UAB2_CLODI
hypothetical protein
Putative toxin-antitoxin system, toxin component {ECO:0000313|EMBL:EHJ25445.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_013_000G1_scaffold_602_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6857..7987
DNA (1131bp) protein (377aa)
Site-specific recombinase, phage integrase family n=14 Tax=Clostridium difficile RepID=G6BNP2_CLODI
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EHJ25444.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
prophage lambdaba04, site-specific recombinase, phage integrase family protein
L2_013_000G1_scaffold_602_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8348..10036)
DNA (1689bp) protein (563aa)
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EQG75922.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EQG75922.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ilvB; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase, large subunit, biosynthetic type n=2 Tax=Clostridium difficile RepID=T4PIS4_CLODI
L2_013_000G1_scaffold_602_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10089..11078)
DNA (990bp) protein (330aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; Ketol-acid reductoisomerase; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Ketol-acid reductoisomerase n=63 Tax=Clostridium difficile RepID=T2U2K5_CLODI
ketol-acid reductoisomerase
L2_013_000G1_scaffold_602_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11388..11627)
DNA (240bp) protein (80aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=C9XQK2_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29713.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_013_000G1_scaffold_602_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11935..12057)
DNA (123bp) protein (41aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=T2YKA1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE66011.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_000G1_scaffold_602_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12157..12918)
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PPQ5_CLODI
conserved hypothetical protein
Putative metal-dependent hydrolase {ECO:0000313|EMBL:CKH06948.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98153.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_013_000G1_scaffold_602_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12923..13744)
DNA (822bp) protein (274aa)
XdhC and CoxI family protein n=169 Tax=Clostridium difficile RepID=T3H6W6_CLODC
putative xanthine dehydrogenase accessoryfactor
XdhC and CoxI family protein {ECO:0000313|EMBL:EQE65988.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_000G1_scaffold_602_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13786..14541)
DNA (756bp) protein (252aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PIS0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS84607.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L2_013_000G1_scaffold_602_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14584..15453)
DNA (870bp) protein (290aa)
Anti-sigma-V factor rsiV n=146 Tax=Clostridium difficile RepID=T3H9T4_CLODC
rsiV; extracytoplasmic function (ECF) anti-sigmafactor rsiV
Anti-sigma-V factor rsiV {ECO:0000313|EMBL:EQE66032.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_000G1_scaffold_602_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15465..15947)
DNA (483bp) protein (161aa)
RNA polymerase sigma factor n=159 Tax=Clostridium difficile RepID=C9XQJ7_CLODC
sigV; RNA polymerase sigma factor
Extra-Cytoplasmic Function sigma factors, ECF family {ECO:0000313|EMBL:CDS84605.1}; Extracytoplasmic function (ECF) sigma factorcsfV {ECO:0000313|EMBL:CEJ98149.1}; RNA polymerase ECF(Extracytoplasmic function)-type sigma factor (Sigma(V)) {ECO:0000313|EMBL:CDS86688.1}; RNA polymerase sigma factor {ECO:0000313|EMBL:CKH06833.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_013_000G1_scaffold_602_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15999..16955)
DNA (957bp) protein (319aa)
putative peptidylprolyl isomerase (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
SurA N-terminal domain protein n=3 Tax=Clostridium difficile RepID=T4YFQ5_CLODI
L2_013_000G1_scaffold_602_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17024..17857)
DNA (834bp) protein (278aa)
Polysaccharide deacetylase n=131 Tax=Clostridium difficile RepID=G6BU29_CLODI
polysaccharide deacetylase
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:EQG75604.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_013_000G1_scaffold_602_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18595..19923)
DNA (1329bp) protein (443aa)
Amino acid permease family protein n=100 Tax=Clostridium difficile RepID=T3HBT7_CLODC
putative amino acid permease
Amino acid permease family protein {ECO:0000313|EMBL:EQE66122.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_000G1_scaffold_602_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20406..20519)
DNA (114bp) protein (38aa)
Uncharacterized protein n=34 Tax=Clostridium difficile RepID=T2TLK8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG76710.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_013_000G1_scaffold_602_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20725..21393)
DNA (669bp) protein (223aa)
hisI; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31)
Histidine biosynthesis bifunctional protein HisIE n=129 Tax=Clostridium difficile RepID=G6BU31_CLODI
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_013_000G1_scaffold_602_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21421..22179)
DNA (759bp) protein (253aa)
hisF; Imidazole glycerol phosphate synthase subunitHisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Imidazole glycerol phosphate synthase subunit HisF n=182 Tax=Clostridium difficile RepID=HIS6_CLOD6
L2_013_000G1_scaffold_602_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22161..22883)
DNA (723bp) protein (241aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)m ethylideneamino]imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=2 Tax=Clostridium difficile RepID=T4PPM3_CLODI
L2_013_000G1_scaffold_602_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22880..23485)
DNA (606bp) protein (202aa)
hisH; Imidazole glycerol phosphate synthase subunitHisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Clostridium difficile RepID=T4PIR1_CLODI
L2_013_000G1_scaffold_602_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23487..24065)
DNA (579bp) protein (193aa)
hisB; Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Imidazoleglycerol-phosphate dehydratase n=187 Tax=Clostridium difficile RepID=HIS7_CLOD6
L2_013_000G1_scaffold_602_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24068..25117)
DNA (1050bp) protein (350aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Histidinol-phosphate aminotransferase n=9 Tax=Clostridium difficile RepID=T2VZC5_CLODI
histidinol-phosphate aminotransferase
L2_013_000G1_scaffold_602_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25151..25777)
DNA (627bp) protein (209aa)
hisG; ATP phosphoribosyltransferase (ATP-PRTase)(ATP-PRT) (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ATP phosphoribosyltransferase n=197 Tax=Clostridium difficile RepID=HIS1_CLOD6
L2_013_000G1_scaffold_602_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25799..26743)
DNA (945bp) protein (315aa)
hisZ; ATP phosphoribosyltransferase regulatorysubunit (EC:6.1.1.21)
ATP phosphoribosyltransferase regulatory subunit {ECO:0000313|EMBL:CAJ68412.1}; EC=6.1.1.21 {ECO:0000313|EMBL:CAJ68412.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Histidyl-tRNA synthetase family protein n=27 Tax=Clostridium difficile RepID=T3HAB0_CLODC
Displaying items 1-30 of 54 in total

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