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L2_013_000G1_scaffold_3710

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_3710_1
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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255..2630
DNA (2376bp) protein (792aa)
Putative peptidase M38 family protein n=1 Tax=Pseudomonas sp. Lz4W RepID=M5QFU6_9PSED
Putative peptidase M38 family protein {ECO:0000313|EMBL:EMI05596.1}; TaxID=1206777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Lz4W.;"
putative peptidase M38 family protein
L2_013_000G1_scaffold_3710_2
Peptostreptococcaceae bacterium ACC19a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3001..3339)
DNA (339bp) protein (113aa)
50S ribosomal protein L17 n=1 Tax=Eubacteriaceae bacterium ACC19a RepID=G9WXM8_9FIRM
50S ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=796937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium ACC19a.;"
L2_013_000G1_scaffold_3710_3
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3354..4310)
DNA (957bp) protein (319aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridium RepID=D8GIM7_CLOLD
L2_013_000G1_scaffold_3710_4
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4343..4936)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ23_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
SSU ribosomal protein S4P
L2_013_000G1_scaffold_3710_5
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4947..5345)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI00036FE120
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
30S ribosomal protein S11
L2_013_000G1_scaffold_3710_6
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5360..5728)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6U1D9_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
rpsM; 30S ribosomal protein S13
L2_013_000G1_scaffold_3710_7
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5746..5859)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=3 Tax=Clostridium RepID=D8GIN1_CLOLD
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L2_013_000G1_scaffold_3710_8
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(5883..6098)
DNA (216bp) protein (72aa)
Translation initiation factor IF-1 n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6ICW3_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
infA; putative translation initiation factor IF-1
L2_013_000G1_scaffold_3710_9
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6123..6872)
DNA (750bp) protein (250aa)
map2; methionine aminopeptidase type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Methionine aminopeptidase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B156_CLOA9
L2_013_000G1_scaffold_3710_10
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6869..7519)
DNA (651bp) protein (217aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
Adenylate kinase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GHE7_9FIRM
adenylate kinase
L2_013_000G1_scaffold_3710_11
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7536..8786)
DNA (1251bp) protein (417aa)
Protein translocase subunit SecY n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC76_HELMI
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
secY; preprotein translocase subunit SecY
L2_013_000G1_scaffold_3710_12
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8786..9235)
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Bacillus massiliosenegalensis RepID=UPI00030CEF54
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
L2_013_000G1_scaffold_3710_13
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9253..9438)
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Clostridium sp. CAG:138 RepID=R6AQF6_9CLOT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
ribosomal protein L30, bacterial/organelle
L2_013_000G1_scaffold_3710_14
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9449..9958)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=2 Tax=Paenibacillus RepID=C6J6B0_9BACL
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
30S ribosomal protein S5
L2_013_000G1_scaffold_3710_15
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9977..10330)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Blautia sp. CAG:257 RepID=R5XE82_9FIRM
LSU ribosomal protein L18P
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L2_013_000G1_scaffold_3710_16
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10352..10897)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Veillonella sp. CAG:933 RepID=R5BIG3_9FIRM
rplF; 50S ribosomal protein L6
Tax=BJP_08E140C01_Clostridiales_46_19
L2_013_000G1_scaffold_3710_17
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(10908..11306)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RS8_CARHZ
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
L2_013_000G1_scaffold_3710_18
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11336..11515)
DNA (180bp) protein (60aa)
30S ribosomal protein S14 type Z n=3 Tax=Dehalobacter RepID=K4KUH3_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
rpsN; 30S ribosomal protein S14
L2_013_000G1_scaffold_3710_19
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11530..12069)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=2 Tax=Desulfotomaculum RepID=F6B5Q5_DESCC
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
50S ribosomal protein L5
L2_013_000G1_scaffold_3710_20
Peptostreptococcaceae bacterium CM5, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12084..12206)
DNA (123bp) protein (41aa)
50S ribosomal protein L24 n=3 Tax=unclassified Eubacteriaceae RepID=G9XEA3_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=796940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM5.;"
50S ribosomal protein L24
Displaying 20 items

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