ggKbase home page

L2_013_000G1_scaffold_2440

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_2440_1
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..220)
DNA (219bp) protein (73aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Thermincola potens (strain JR) RepID=D5X851_THEPJ
UBA/THIF-type NAD/FAD binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:ADG82771.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
L2_013_000G1_scaffold_2440_2
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

393..590
DNA (198bp) protein (66aa)
disulfide oxidoreductase n=1 Tax=Selenomonas bovis RepID=UPI00035D0EFD
Hybrid cluster protein-associated redox disulfide protein {ECO:0000313|EMBL:EQB29256.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
hypothetical protein
L2_013_000G1_scaffold_2440_3
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

702..2939
DNA (2238bp) protein (746aa)
Penicillin-binding protein, 1A family n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W0E5_DESAS
penicillin-binding protein
Tax=BJP_08E140C01_Clostridiales_46_19
L2_013_000G1_scaffold_2440_4
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3350..4018)
DNA (669bp) protein (223aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E992_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJS21949.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
PBS lyase HEAT domain-containing protein
L2_013_000G1_scaffold_2440_5
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4131..5312)
DNA (1182bp) protein (394aa)
Copper amine oxidase domain protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VZZ7_DESAS
copper amine oxidase domain-containing protein
Copper amine oxidase domain protein {ECO:0000313|EMBL:ACV64965.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
L2_013_000G1_scaffold_2440_6
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5424..5927
DNA (504bp) protein (168aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Blautia RepID=R5BV66_9FIRM
cyclophilin-type peptidyl-prolyl cis-trans isomerase
L2_013_000G1_scaffold_2440_7
unknown

Not on your lists

comp(6035..6217)
DNA (183bp) protein (61aa)

This feature has no annotations

L2_013_000G1_scaffold_2440_8
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6237..6689)
DNA (453bp) protein (151aa)
SsrA-binding protein n=1 Tax=Selenomonas sp. CM52 RepID=J6HL70_9FIRM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. CM52.;"
SsrA-binding protein
L2_013_000G1_scaffold_2440_9
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6670..8829)
DNA (2160bp) protein (720aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYV6_CLOCD
L2_013_000G1_scaffold_2440_10
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9003..10385)
DNA (1383bp) protein (461aa)
Argininosuccinate lyase {ECO:0000255|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000255|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000255|HAMAP-Rule:MF_00006}; TaxID=349161 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
Argininosuccinate lyase n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=ARLY_DESRM
argininosuccinate lyase
L2_013_000G1_scaffold_2440_11
Peptostreptococcus stomatis, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10382..11611)
DNA (1230bp) protein (410aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=596315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus stomatis DSM 17678.;"
Argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E544_9FIRM
L2_013_000G1_scaffold_2440_12
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11623..12546)
DNA (924bp) protein (308aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=649747 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
Ornithine carbamoyltransferase n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1W7P1_ANEAE
ornithine carbamoyltransferase
L2_013_000G1_scaffold_2440_13
unknown

Not on your lists

comp(12539..12877)
DNA (339bp) protein (113aa)

This feature has no annotations

L2_013_000G1_scaffold_2440_14
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12870..13733)
DNA (864bp) protein (288aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EDS08906.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EDS08906.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Prephenate dehydrogenase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHD8_9FIRM
prephenate dehydrogenase
L2_013_000G1_scaffold_2440_15
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13841..15079
DNA (1239bp) protein (413aa)
Competence/damage-inducible domain protein CinA (Fragment) n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PC32_9FIRM
Competence/damage-inducible domain protein CinA {ECO:0000313|EMBL:EDS10787.1}; Flags: Fragment;; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
cinA; competence/damage-inducible protein CinA
L2_013_000G1_scaffold_2440_16
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15169..16218)
DNA (1050bp) protein (350aa)
Ppic-type ppiase domain protein, putative n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TBA8_HELMI
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=CG_Delta_01
L2_013_000G1_scaffold_2440_17
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16264..18546)
DNA (2283bp) protein (761aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
Transcription-repair-coupling factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM
transcription-repair coupling factor
Displaying 17 items

View Taxonomy