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L2_013_000G1_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_305_1
unknown

Not on your lists

2..181
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

L2_013_000G1_scaffold_305_2
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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438..2960
-----------------
DNA (2523bp)
protein (841aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LUB4_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCY80994.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L2_013_000G1_scaffold_305_3
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(3032..5164)
-----------------
DNA (2133bp)
protein (711aa)
diguanylate cyclase/phosphodiesterase n=1 Tax=Clostridium arbusti RepID=UPI000288B199
Diguanylate cyclase/phosphodiesterase with PAS sensor {ECO:0000313|EMBL:EQB27733.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
signaling protein
L2_013_000G1_scaffold_305_4
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5285..7537
-----------------
DNA (2253bp)
protein (751aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7Y0_9CLOT
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFE14668.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
diguanylate cyclase (GGDEF) domain
L2_013_000G1_scaffold_305_5
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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7539..8498
-----------------
DNA (960bp)
protein (320aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5Y1I0_BILWA
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EFV46152.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
diguanylate cyclase (GGDEF) domain
L2_013_000G1_scaffold_305_6
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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8498..9559
-----------------
DNA (1062bp)
protein (354aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00035DDCE7
HD domain protein {ECO:0000313|EMBL:CDC68670.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
L2_013_000G1_scaffold_305_7
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9628..9984
-----------------
DNA (357bp)
protein (119aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T5I3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68673.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Hpt domain.
L2_013_000G1_scaffold_305_8
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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10035..11684
-----------------
DNA (1650bp)
protein (550aa)
hypothetical protein n=1 Tax=Clostridium arbusti RepID=UPI0002886556
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL33749.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L2_013_000G1_scaffold_305_9
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11857..14316
-----------------
DNA (2460bp)
protein (820aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=C0BBF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG89424.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
ATPase, P-type (transporting), HAD superfamily, subfamily IC
L2_013_000G1_scaffold_305_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14585..15082
-----------------
DNA (498bp)
protein (166aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NFN2_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS06662.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L2_013_000G1_scaffold_305_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15453..16574
-----------------
DNA (1122bp)
protein (374aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8U1_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_013_000G1_scaffold_305_12
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16555..17217
-----------------
DNA (663bp)
protein (221aa)
riboflavin synthase, alpha subunit (EC:2.5.1.9)
Riboflavin synthase alpha subunit n=1 Tax=Eubacterium sp. CAG:192 RepID=R6GE72_9FIRM
Riboflavin synthase alpha subunit {ECO:0000313|EMBL:CDB12567.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
L2_013_000G1_scaffold_305_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17232..18431
-----------------
DNA (1200bp)
protein (400aa)
Riboflavin biosynthesis protein RibBA n=2 Tax=Ruminococcus RepID=C6J8T9_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
riboflavin biosynthesis; GTP-cyclohydrolase II
L2_013_000G1_scaffold_305_14
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18466..18936
-----------------
DNA (471bp)
protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N1ZTD5_9FIRM
6,7-dimethyl-8-ribityllumazine synthase
L2_013_000G1_scaffold_305_15
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

19097..21238
-----------------
DNA (2142bp)
protein (714aa)
Ribonucleoside-diphosphate reductase adenosylcobalamin-dependent n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RKY0_9FIRM
Ribonucleoside-diphosphate reductase adenosylcobalamin-dependent {ECO:0000313|EMBL:CDC43711.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L2_013_000G1_scaffold_305_16
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21522..22061)
-----------------
DNA (540bp)
protein (180aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6TBG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC56122.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
L2_013_000G1_scaffold_305_17
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22076..22576)
-----------------
DNA (501bp)
protein (167aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6S4M3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC56123.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
hypothetical protein
L2_013_000G1_scaffold_305_18
unknown

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comp(22609..22932)
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

L2_013_000G1_scaffold_305_19
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22939..23469)
-----------------
DNA (531bp)
protein (177aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003613C1D
Uncharacterized protein {ECO:0000313|EMBL:CDC56121.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
L2_013_000G1_scaffold_305_20
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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comp(23883..24767)
-----------------
DNA (885bp)
protein (295aa)
Transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RJF7_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCZ33077.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Transcriptional regulator
L2_013_000G1_scaffold_305_21
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

24927..26342
-----------------
DNA (1416bp)
protein (472aa)
Amino acid carrier protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5QXD8_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:CCZ33078.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
amino acid carrier protein
L2_013_000G1_scaffold_305_22
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26508..30095
-----------------
DNA (3588bp)
protein (1196aa)
Uncharacterized protein n=1 Tax=Blautia hydrogenotrophica CAG:147 RepID=R5BWE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX59863.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_013_000G1_scaffold_305_23
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30189..30878)
-----------------
DNA (690bp)
protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KHD85118.1}; TaxID=363870 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus ginsengihumi.;"
Serine/threonine protein kinase id=2231034 bin=GWB2_Clostridiales_37_7 species=Syntrophobotulus glycolicus genus=Syntrophobotulus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
serine/threonine protein kinase
L2_013_000G1_scaffold_305_24
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31348..32178)
-----------------
DNA (831bp)
protein (277aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KIZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS46206.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
lactose operon transcription activator
L2_013_000G1_scaffold_305_25
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32339..34312
-----------------
DNA (1974bp)
protein (658aa)
sacP; PTS system, sucrose-specific IIBC component (EC:2.7.1.69)
PTS system, glucose subfamily, IIA component n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JG72_9FIRM
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EOS30137.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
L2_013_000G1_scaffold_305_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34324..35769
-----------------
DNA (1446bp)
protein (482aa)
sucrose-6-phosphate hydrolase (EC:3.2.1.26)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CS68_9FIRM
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:EES75792.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_013_000G1_scaffold_305_27
unknown

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comp(35901..36089)
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

L2_013_000G1_scaffold_305_28
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36143..36385)
-----------------
DNA (243bp)
protein (81aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JUD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ31450.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L2_013_000G1_scaffold_305_29
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36327..36491)
-----------------
DNA (165bp)
protein (55aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JUD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS37770.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
L2_013_000G1_scaffold_305_30
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36478..36927)
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6BXZ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA68090.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
hypothetical protein
Displaying items 1-30 of 71 in total

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