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L2_013_000G1_scaffold_1602

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1602_1
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1970
DNA (1968bp) protein (656aa)
Alpha-L-rhamnosidase N-terminal domain protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B9K9_9FIRM
Alpha-L-rhamnosidase N-terminal domain protein {ECO:0000313|EMBL:EEG89961.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase.
L2_013_000G1_scaffold_1602_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1945..4449
DNA (2505bp) protein (835aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CBL11432.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CBL11432.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Beta-glucosidase-related glycosidases n=3 Tax=Roseburia intestinalis RepID=D4KVP2_9FIRM
L2_013_000G1_scaffold_1602_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4503..7022
DNA (2520bp) protein (840aa)
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CBL13855.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CBL13855.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase-related glycosidases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2L5_9FIRM
L2_013_000G1_scaffold_1602_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7027..7167
DNA (141bp) protein (47aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C0B9L3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11434.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_013_000G1_scaffold_1602_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7180..7434
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2L6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13856.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_013_000G1_scaffold_1602_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7376..8998
DNA (1623bp) protein (541aa)
Beta-galactosidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2L7_9FIRM
Beta-galactosidase
Beta-galactosidase {ECO:0000313|EMBL:CBL13857.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_013_000G1_scaffold_1602_7
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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9028..11319
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JW19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38365.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
glycoside hydrolase
L2_013_000G1_scaffold_1602_8
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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11541..11984
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JWA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38343.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L2_013_000G1_scaffold_1602_9
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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12056..14068
DNA (2013bp) protein (671aa)
MATE efflux family protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JWP5_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EOS38346.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L2_013_000G1_scaffold_1602_10
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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14088..15650
DNA (1563bp) protein (521aa)
Endonuclease MutS2 {ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|SAAS:SAAS00084246};; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
MutS2 family protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JVW4_9FIRM
MutS2 family protein
L2_013_000G1_scaffold_1602_11
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15595..16314
DNA (720bp) protein (240aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GTS9_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDE30774.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_000G1_scaffold_1602_12
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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16311..17375
DNA (1065bp) protein (355aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Sensor histidine kinase n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R5V1_9FIRM
Signal transduction histidine kinase
L2_013_000G1_scaffold_1602_13
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17528..18091
DNA (564bp) protein (188aa)
Phosphatidylglycerophosphate synthase (EC:2.7.8.5)
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B4K9_9FIRM
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:EXG84341.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
L2_013_000G1_scaffold_1602_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

18094..18630
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42428.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L2_013_000G1_scaffold_1602_15
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18584..19795
DNA (1212bp) protein (404aa)
Uncharacterized protein n=4 Tax=root RepID=U5FBV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHF07993.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Glycosyltransferase Family 28-like b-glycosyltransferase
L2_013_000G1_scaffold_1602_16
unknown

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20407..21036
DNA (630bp) protein (210aa)

This feature has no annotations

L2_013_000G1_scaffold_1602_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21051..21485
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CLJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25290.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L2_013_000G1_scaffold_1602_18
unknown

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21507..21656
DNA (150bp) protein (50aa)

This feature has no annotations

L2_013_000G1_scaffold_1602_19
Staphylococcus sp. CAG:324, Tenericutes, Bacteria

Not on your lists

21676..22074
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Staphylococcus sp. CAG:324 RepID=R6TAY3_9STAP
Uncharacterized protein {ECO:0000313|EMBL:CDC70543.1}; TaxID=1262969 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus; environmental samples.;" source="Staphylococcus sp. CAG:324.;"
L2_013_000G1_scaffold_1602_20
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22067..23083
DNA (1017bp) protein (339aa)
Alpha/beta hydrolase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GPK6_9FIRM
Alpha/beta hydrolase {ECO:0000313|EMBL:CDB27368.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Prolyl oligopeptidase family.
L2_013_000G1_scaffold_1602_21
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23074..23634
DNA (561bp) protein (187aa)
RsmD family RNA methyltransferase n=1 Tax=Firmicutes bacterium M10-2 RepID=R9LX53_9FIRM
RNA methyltransferase, RsmD {ECO:0000313|EMBL:CFY04893.1}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
methyltransferase
L2_013_000G1_scaffold_1602_22
unknown

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23636..24037
DNA (402bp) protein (134aa)

This feature has no annotations

L2_013_000G1_scaffold_1602_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24027..24953
DNA (927bp) protein (309aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=2 Tax=Clostridiales RepID=G9YWQ6_9FIRM
L2_013_000G1_scaffold_1602_24
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25118..25384
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium COE1 RepID=R9L2V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS53000.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
transcriptional regulator
L2_013_000G1_scaffold_1602_25
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25417..25665)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K1U8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS40206.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Helix-turn-helix.
Displaying 25 items

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