ggKbase home page

L2_013_000G1_scaffold_1632

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1632_1
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..339
DNA (339bp) protein (113aa)
Transporter, auxin efflux carrier (AEC) family protein n=2 Tax=Clostridiales RepID=B0NFN4_CLOSV
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EDS06665.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Predicted permeases
L2_013_000G1_scaffold_1632_2
Austwickia chelonae, Austwickia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

777..971
DNA (195bp) protein (65aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Clostridium sp. CAG:62 RepID=R7C776_9CLOT
Thiazole biosynthesis protein ThiS {ECO:0000313|EMBL:GAB79120.1}; TaxID=1184607 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Austwickia.;" source="Austwickia chelonae NBRC 105200.;"
thiamine biosynthesis protein ThiS
L2_013_000G1_scaffold_1632_3
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

976..1614
DNA (639bp) protein (213aa)
thiamine biosynthesis protein ThiF, family 2 (EC:2.7.7.-)
Thiamine biosynthesis protein ThiF n=2 Tax=Lachnospiraceae RepID=F3ACL7_9FIRM
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:EGG80026.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L2_013_000G1_scaffold_1632_4
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1632..2408
DNA (777bp) protein (259aa)
Thiazole biosynthesis protein ThiG n=3 Tax=Lachnospiraceae RepID=C9LAM0_BLAHA
Thiazole synthase {ECO:0000313|EMBL:CDC07783.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
thiG; thiazole synthase
L2_013_000G1_scaffold_1632_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2421..3641
DNA (1221bp) protein (407aa)
Thiazole biosynthesis protein ThiH n=1 Tax=Roseburia sp. CAG:197 RepID=R5YEI0_9FIRM
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:CDA25275.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
tyrosine lyase ThiH
L2_013_000G1_scaffold_1632_6
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3634..4248
DNA (615bp) protein (205aa)
Thiamine monophosphate synthase (EC:2.5.1.3)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=R6NNH6_9FIRM
Putative thiamine-phosphate diphosphorylase {ECO:0000313|EMBL:EEX21016.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
L2_013_000G1_scaffold_1632_7
Brachyspira hampsonii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

4273..4608
DNA (336bp) protein (112aa)
Major facilitator superfamily MFS 1 n=1 Tax=Brachyspira hampsonii 30446 RepID=L0X232_9SPIR
Major facilitator superfamily MFS 1 {ECO:0000313|EMBL:EKV56860.1}; TaxID=1289135 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira hampsonii 30446.;"
hypothetical protein
L2_013_000G1_scaffold_1632_8
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4640..5863)
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JQU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35621.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
aminotransferase
L2_013_000G1_scaffold_1632_9
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5984..6622
DNA (639bp) protein (213aa)
Transcriptional regulator n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U6Z0_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:EKQ57122.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
regulatory protein TetR
L2_013_000G1_scaffold_1632_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6801..9071)
DNA (2271bp) protein (757aa)
ATP-dependent protease La (EC:3.4.21.53)
ATP-dependent protease La {ECO:0000313|EMBL:CBL27447.1}; EC=3.4.21.53 {ECO:0000313|EMBL:CBL27447.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ATP-dependent protease La n=1 Tax=Ruminococcus torques L2-14 RepID=D4M087_9FIRM
L2_013_000G1_scaffold_1632_11
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

9353..11143
DNA (1791bp) protein (597aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC42339.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
ATPase components of ABC transporters with duplicated ATPase domains
L2_013_000G1_scaffold_1632_12
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11429..12247
DNA (819bp) protein (273aa)
PRD domain protein n=3 Tax=Lachnospiraceae RepID=C9LB93_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC08166.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
transcriptional antiterminator, BglG family
L2_013_000G1_scaffold_1632_13
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

12333..12590
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RI07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ32587.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Phosphotransferase System HPr (HPr) Family
L2_013_000G1_scaffold_1632_14
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12610..14232
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NIH3_9FIRM
L2_013_000G1_scaffold_1632_15
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14287..14535
DNA (249bp) protein (83aa)
PTS system N-acetylglucosamine-specific IIBC subunit n=1 Tax=Clostridium sp. CAG:242 RepID=R6DCH2_9CLOT
PTS system N-acetylglucosamine-specific IIBC subunit {ECO:0000313|EMBL:CDA75527.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L2_013_000G1_scaffold_1632_16
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(14633..15889)
DNA (1257bp) protein (419aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
6-phosphofructokinase (EC:2.7.1.11)
Putative 6-phosphofructokinase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R0S4_9FIRM
L2_013_000G1_scaffold_1632_17
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

16103..16972
DNA (870bp) protein (290aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
fructose-bisphosphate aldolase n=1 Tax=Blautia producta RepID=UPI00037DC546
Fructose-1 6-bisphosphate aldolase class II {ECO:0000313|EMBL:CDC42444.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L2_013_000G1_scaffold_1632_18
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17097..18209)
DNA (1113bp) protein (371aa)
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase GlgD subunit n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6F8N4_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG50533.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
L2_013_000G1_scaffold_1632_19
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18211..19350)
DNA (1140bp) protein (380aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CI54_9FIRM
L2_013_000G1_scaffold_1632_20
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

19587..20939
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R0S6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC42448.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
amino acid carrier protein
L2_013_000G1_scaffold_1632_21
Bifidobacterium biavatii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21135..22976
DNA (1842bp) protein (614aa)
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:KFI51740.1}; EC=3.2.1.55 {ECO:0000313|EMBL:KFI51740.1};; TaxID=1437608 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium biavatii DSM 23969.;"
Glycosyl hydrolase family 43 n=1 Tax=Clostridium leptum CAG:27 RepID=R6NF72_9CLOT
glycoside hydrolase
L2_013_000G1_scaffold_1632_22
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23107..23883
DNA (777bp) protein (259aa)
3-oxoacyl-ACP reductase n=1 Tax=Blautia producta RepID=UPI000363DE07
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEH52427.1}; TaxID=941639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus coagulans (strain 2-6).;"
L2_013_000G1_scaffold_1632_23
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24100..24834
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
tRNA pseudouridine synthase A n=3 Tax=Lachnospiraceae RepID=C9L6S0_BLAHA
tRNA pseudouridine synthase A
L2_013_000G1_scaffold_1632_24
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

24885..25331
DNA (447bp) protein (149aa)
Thioesterase family protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6S6Z7_9FIRM
Thioesterase family protein {ECO:0000313|EMBL:CDC42452.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L2_013_000G1_scaffold_1632_25
unknown

Not on your lists

25483..25560
DNA (78bp) protein (26aa)
Glutamine--tRNA ligase n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NR06_9FIRM
Displaying 25 items

View Taxonomy