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L2_013_000G1_scaffold_1721

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1721_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..532
DNA (531bp) protein (177aa)
Uncharacterized protein n=7 Tax=root RepID=B0G6E1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46702.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_013_000G1_scaffold_1721_2
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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628..1395
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q252G2_DESHY
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE81830.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
L2_013_000G1_scaffold_1721_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1402..2703)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32565.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L2_013_000G1_scaffold_1721_4
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2700..3407)
DNA (708bp) protein (236aa)
Response regulator of the lytr/algr family protein n=1 Tax=Paenibacillus alvei A6-6i-x RepID=S9UFA8_PAEAL
Response regulator of the lytr/algr family protein {ECO:0000313|EMBL:EPY13336.1}; TaxID=1117109 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei A6-6i-x.;"
response regulator receiver domain protein
L2_013_000G1_scaffold_1721_5
unknown

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3710..4129
DNA (420bp) protein (140aa)

This feature has no annotations

L2_013_000G1_scaffold_1721_6
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4219..5253
DNA (1035bp) protein (345aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y1_BLAHA
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEX22563.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
L2_013_000G1_scaffold_1721_7
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5219..6499)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PV01_9FIRM
Predicted membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EDS21899.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_013_000G1_scaffold_1721_8
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6483..6929)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003695803
Transcriptional regulators
MarR family protein {ECO:0000313|EMBL:CDA32026.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_013_000G1_scaffold_1721_9
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7129..7794
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WV71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA06465.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
hypothetical protein
L2_013_000G1_scaffold_1721_10
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7846..8547
DNA (702bp) protein (234aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
methylthioadenosine nucleosidase (EC:3.2.2.9 3.2.2.16)
MTA/SAH nucleosidase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DDE7_CLOS4
L2_013_000G1_scaffold_1721_11
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8787..9365
DNA (579bp) protein (193aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A5C2_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
RNA polymerase
L2_013_000G1_scaffold_1721_12
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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9385..10623
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BP31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA64955.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
hypothetical protein
L2_013_000G1_scaffold_1721_13
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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10712..11302
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IHZ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI58900.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
HDIG domain-containing protein
L2_013_000G1_scaffold_1721_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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11299..12207
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38706.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
auxin efflux carrier family protein
L2_013_000G1_scaffold_1721_15
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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12278..13042
DNA (765bp) protein (255aa)
Putative AIR carboxylase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAT1_9FIRM
Putative AIR carboxylase {ECO:0000313|EMBL:CDC46008.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
NCAIR mutase (PurE)-related proteins
L2_013_000G1_scaffold_1721_16
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13090..13944
DNA (855bp) protein (285aa)
UPF0272 protein BN789_00598 n=1 Tax=Clostridium sp. CAG:81 RepID=R5GF19_9CLOT
UPF0272 protein BN789_00598 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
conserved hypothetical protein TIGR00299
L2_013_000G1_scaffold_1721_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13969..14556
DNA (588bp) protein (196aa)
Uncharacterized conserved protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFH3_CLOSC
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK76447.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_013_000G1_scaffold_1721_18
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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14774..15910
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:308 RepID=R6ZT35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD51668.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L2_013_000G1_scaffold_1721_19
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16033..17310
DNA (1278bp) protein (426aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000313|EMBL:CBK76445.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
DNA polymerase IV n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFH1_CLOSC
L2_013_000G1_scaffold_1721_20
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17307..17618
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5T1S8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ59473.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
hypothetical protein
L2_013_000G1_scaffold_1721_21
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17801..18640
DNA (840bp) protein (280aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HP36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE96943.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L2_013_000G1_scaffold_1721_22
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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18781..19428
DNA (648bp) protein (216aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R1R6_9FIRM
L2_013_000G1_scaffold_1721_23
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19588..20454
DNA (867bp) protein (289aa)
Organophosphate reductase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CYT3_9CLOT
Organophosphate reductase {ECO:0000313|EMBL:ERI72456.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
2,5-diketo-D-gluconic acid reductase
L2_013_000G1_scaffold_1721_24
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20512..21045
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IEM9_9CLOT
FMN reductase {ECO:0000313|EMBL:EWM55173.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
NADPH-dependent FMN reductase
L2_013_000G1_scaffold_1721_25
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21226..21762)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K5I5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38722.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
flavodoxin domain protein
L2_013_000G1_scaffold_1721_26
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(21834..22736)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RDX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46025.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L2_013_000G1_scaffold_1721_27
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(22750..23607)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46028.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L2_013_000G1_scaffold_1721_28
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(23600..24460)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RDX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46030.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
Displaying 28 items

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