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L2_013_000G1_scaffold_2334

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_2334_1
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(481..1890)
DNA (1410bp) protein (470aa)
Peptidase dimerization domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4N0_9CLOT
Peptidase dimerization domain protein {ECO:0000313|EMBL:EEG53714.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
L2_013_000G1_scaffold_2334_2
Roseburia sp. CAG:471, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1929..2894)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002E8FA13
Beta-lactamase {ECO:0000313|EMBL:CDD99709.1}; TaxID=1262948 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:471.;"
beta-lactamase
L2_013_000G1_scaffold_2334_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2956..4263)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45863.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
CitMHS family citrate/H+ symporter
L2_013_000G1_scaffold_2334_4
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4465..5418)
DNA (954bp) protein (318aa)
LysR substrate binding domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTC2_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EEG57638.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
transcriptional regulator
L2_013_000G1_scaffold_2334_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5669..6037
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9Z1J9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ14334.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
hypothetical protein
L2_013_000G1_scaffold_2334_6
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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6175..7377
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XHL4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY99172.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
alpha-galactosidase
L2_013_000G1_scaffold_2334_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7559..8566
DNA (1008bp) protein (336aa)
Sulfate-transporting ATPase (EC:3.6.3.25)
ABC transporter ATP-binding protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9YC94_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ09548.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L2_013_000G1_scaffold_2334_8
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8511..9524
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JNX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB64483.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
ABC-type transport, permease
L2_013_000G1_scaffold_2334_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9637..10320
DNA (684bp) protein (228aa)
Two-component system response regulator n=2 Tax=Clostridium RepID=N9Z5U7_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ15889.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
dltR; transcriptional regulatory protein DltR
L2_013_000G1_scaffold_2334_10
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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10380..11591
DNA (1212bp) protein (404aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
putative two-component histidine kinase (EC:2.7.13.3)
Histidine kinase A domain protein n=2 Tax=Clostridium RepID=D3AKN6_9CLOT
L2_013_000G1_scaffold_2334_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11889..12347
DNA (459bp) protein (153aa)
PTS system IIA component, L-Asc family (EC:2.7.1.69)
PTS system, IIA component n=1 Tax=Clostridium sp. D5 RepID=F0YW40_9CLOT
PTS system, IIA component {ECO:0000313|EMBL:EGB93878.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L2_013_000G1_scaffold_2334_12
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12375..13688
DNA (1314bp) protein (438aa)
UPI000308180B related cluster n=1 Tax=unknown RepID=UPI000308180B
PTS ascorbate transporter subunit IIC
PTS ascorbate transporter subunit IIC {ECO:0000313|EMBL:AJB69059.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
L2_013_000G1_scaffold_2334_13
Citrobacter rodentium, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13758..14087
DNA (330bp) protein (110aa)
Putative phosphotransferase enzyme II, B component n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TR57_CITRI
phosphotransferase enzyme II, B component
Putative phosphotransferase enzyme II, B component {ECO:0000313|EMBL:CBG87644.1}; TaxID=637910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype; 4280).;"
L2_013_000G1_scaffold_2334_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14100..15605
DNA (1506bp) protein (502aa)
Choline-sulfatase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DS44_CITFR
Type I phosphodiesterase / nucleotide pyrophosphatase family protein {ECO:0000313|EMBL:KEL79753.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
sulfatase
L2_013_000G1_scaffold_2334_15
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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15670..16737
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N1Y4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS19744.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
hypothetical protein
L2_013_000G1_scaffold_2334_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17039..19006
DNA (1968bp) protein (656aa)
MATE efflux family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4Z0_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EEG53610.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Na+ driven multidrug efflux pump
Displaying 16 items

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