ggKbase home page

L2_013_000G1_scaffold_1072

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1072_1
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..995)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LJ37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS58366.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
sodium:dicarboxylate symporter family protein
L2_013_000G1_scaffold_1072_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1021..2307)
DNA (1287bp) protein (429aa)
UPF0597 protein ANACOL_04369 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHS6_9FIRM
UPF0597 protein ANACOL_04369 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L2_013_000G1_scaffold_1072_3
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2581..3822)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Megamonas rupellensis RepID=UPI0003662496
NC domain protein {ECO:0000313|EMBL:EFY05598.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
NC domain protein
L2_013_000G1_scaffold_1072_4
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(3835..5931)
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LC95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY05599.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L2_013_000G1_scaffold_1072_5
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6330..6965)
DNA (636bp) protein (212aa)
Selenium metabolism protein YedF n=1 Tax=Dorea sp. CAG:105 RepID=R5D8U8_9FIRM
Selenium metabolism protein YedF {ECO:0000313|EMBL:CCX75254.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
selenium metabolism protein YedF
L2_013_000G1_scaffold_1072_6
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7005..7631)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RGA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC46850.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L2_013_000G1_scaffold_1072_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7677..8468)
DNA (792bp) protein (264aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9Q8_9FIRM
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EGJ47086.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_013_000G1_scaffold_1072_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8514..9164)
DNA (651bp) protein (217aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Thiamine-phosphate synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J2F7_9CLOT
thiamine-phosphate pyrophosphorylase
L2_013_000G1_scaffold_1072_9
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9151..9993)
DNA (843bp) protein (281aa)
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Hydroxyethylthiazole kinase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JPA4_CELLD
L2_013_000G1_scaffold_1072_10
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10011..10646)
DNA (636bp) protein (212aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RW78_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP15158.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
thiW protein
L2_013_000G1_scaffold_1072_11
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10643..11950)
DNA (1308bp) protein (436aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
Phosphomethylpyrimidine synthase n=3 Tax=Lachnospiraceae RepID=C9L4L5_BLAHA
thiamine biosynthesis protein ThiC
L2_013_000G1_scaffold_1072_12
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12259..12864)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XLP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY96908.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L2_013_000G1_scaffold_1072_13
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12922..14274)
DNA (1353bp) protein (451aa)
Magnesium transporter n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IJC2_9CLOT
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
magnesium transporter
L2_013_000G1_scaffold_1072_14
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14604..15074)
DNA (471bp) protein (157aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
methylglyoxal synthase (EC:4.2.3.3)
methylglyoxal synthase n=1 Tax=Blautia producta RepID=UPI00036A5F33
L2_013_000G1_scaffold_1072_15
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15092..17290)
DNA (2199bp) protein (733aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
DNA topoisomerase 3 n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5INQ1_9CLOT
DNA topoisomerase III
L2_013_000G1_scaffold_1072_16
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17341..18510)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TQT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ59282.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
hypothetical protein
L2_013_000G1_scaffold_1072_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18525..19913)
DNA (1389bp) protein (463aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IC24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60942.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Predicted membrane protein involved in D-alanine export
L2_013_000G1_scaffold_1072_18
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19926..20510)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IC23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60941.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L2_013_000G1_scaffold_1072_19
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20752..21783
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IC22_9CLOT
L2_013_000G1_scaffold_1072_20
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22114..22359
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D3AIH5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFC98404.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
hypothetical protein
L2_013_000G1_scaffold_1072_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22430..23263)
DNA (834bp) protein (278aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
Undecaprenyl-diphosphatase n=2 Tax=Clostridium RepID=D3AIH3_9CLOT
undecaprenol kinase
L2_013_000G1_scaffold_1072_22
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23283..23960)
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CVK2_9CLOT
L2_013_000G1_scaffold_1072_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24050..24487)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9XHC2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ14716.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L2_013_000G1_scaffold_1072_24
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24477..26636)
DNA (2160bp) protein (720aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CN23_9CLOT
CheA signal transduction histidine kinase
L2_013_000G1_scaffold_1072_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26642..27589)
DNA (948bp) protein (316aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KG03_9FIRM
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EGN34409.2}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
chemosensory protein
L2_013_000G1_scaffold_1072_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27616..28077)
DNA (462bp) protein (154aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KG04_9FIRM
MCP proteins methylation stimulator CheD
L2_013_000G1_scaffold_1072_27
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28094..28705)
DNA (612bp) protein (204aa)
cheC; Chemotaxis protein CheY-P phosphatase CheC (EC:3.-.-.-)
CheC-like family protein n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SPS5_9FIRM
CheC-like family protein {ECO:0000313|EMBL:EFP60440.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
L2_013_000G1_scaffold_1072_28
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28710..29087)
DNA (378bp) protein (126aa)
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains n=1 Tax=Eubacterium sp. CAG:786 RepID=R5H1N0_9FIRM
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains {ECO:0000313|EMBL:CCY18701.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L2_013_000G1_scaffold_1072_29
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29098..30780)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XTP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY99318.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
methyl-accepting chemotaxis sensory transducer
L2_013_000G1_scaffold_1072_30
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30820..31179)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HJK5_9CLOT
Chemotaxis protein CheY {ECO:0000313|EMBL:KJJ73360.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
cheB; chemotaxis protein
Displaying items 1-30 of 37 in total

View Taxonomy