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L2_013_000G1_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_42_1
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(212..2128)
DNA (1917bp) protein (639aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Clostridium sp. CAG:217 RepID=R6J034_9CLOT
L2_013_000G1_scaffold_42_2
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3162..4715
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Ribonuclease Y n=1 Tax=Clostridium sp. CAG:678 RepID=R5KQD5_9CLOT
metal dependent phosphohydrolase
L2_013_000G1_scaffold_42_3
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4785..5081
DNA (297bp) protein (99aa)
Stress responsive alpha-beta barrel domain-containing protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDW5_9FIRM
Stress responsive alpha-beta barrel domain-containing protein {ECO:0000313|EMBL:EFW03768.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L2_013_000G1_scaffold_42_4
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5257..5988
DNA (732bp) protein (244aa)
Chain length determinant protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L1U1_9CLOT
Chain length determinant protein {ECO:0000313|EMBL:CCY67301.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
lipopolysaccharide biosynthesis protein
L2_013_000G1_scaffold_42_5
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5989..6741
DNA (753bp) protein (251aa)
Capsular exopolysaccharide family n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XWH3_9FIRM
Capsular exopolysaccharide family {ECO:0000313|EMBL:CDA13241.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
capsular polysaccharide biosynthesis protein Cap1B
L2_013_000G1_scaffold_42_6
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6738..8213
DNA (1476bp) protein (492aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5Y9E7_9FIRM
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:CDA13242.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
L2_013_000G1_scaffold_42_7
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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8224..9369
DNA (1146bp) protein (382aa)
Glycosyltransferase (EC:2.4.1.57)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AHG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG80937.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L2_013_000G1_scaffold_42_8
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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9366..10535
DNA (1170bp) protein (390aa)
Uncharacterized protein n=9 Tax=Enterococcus faecium RepID=L2J8F3_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ELA76796.1}; TaxID=1138890 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0002.;"
hypothetical protein
L2_013_000G1_scaffold_42_9
Bifidobacterium asteroides, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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10523..11542
DNA (1020bp) protein (340aa)
glycosyltransferase (EC:2.4.1.175 2.4.1.226)
Glycosyltransferase {ECO:0000313|EMBL:AFU72227.1}; EC=2.4.1.175 {ECO:0000313|EMBL:AFU72227.1};; EC=2.4.1.226 {ECO:0000313|EMBL:AFU72227.1};; TaxID=1147128 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium asteroides (strain PRL2011).;"
Glycosyltransferase n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4INL6_BIFAP
L2_013_000G1_scaffold_42_10
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11717..12484
DNA (768bp) protein (256aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Clostridium sp. CAG:217 RepID=R6IP32_9CLOT
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_000G1_scaffold_42_11
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12589..14043)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IYT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51604.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Protein of unknown function (DUF3048).
L2_013_000G1_scaffold_42_12
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14187..14807
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L4F3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY68186.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
L2_013_000G1_scaffold_42_13
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

14808..15053
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BGX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD65071.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
L2_013_000G1_scaffold_42_14
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(15103..15882)
DNA (780bp) protein (260aa)
Sugar phosphate isomerases/epimerases n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BEC5_9FIRM
Sugar phosphate isomerases/epimerases {ECO:0000313|EMBL:CDD63847.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
Sugar phosphate isomerases/epimerases
L2_013_000G1_scaffold_42_15
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15879..17144)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q9J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32475.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
putative aminotransferase MSMEG_6286/MSMEI_6121
L2_013_000G1_scaffold_42_16
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

comp(17296..18192)
DNA (897bp) protein (299aa)
Inosose dehydratase {ECO:0000256|HAMAP-Rule:MF_01672}; EC=4.2.1.44 {ECO:0000256|HAMAP-Rule:MF_01672};; 2-keto-myo-inositol dehydratase {ECO:0000256|HAMAP-Rule:MF_01672}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
inosose dehydratase n=1 Tax=Chloroflexi bacterium oral taxon 439 RepID=UPI0003B7314F
putative inosose dehydratase
L2_013_000G1_scaffold_42_17
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18215..20068)
DNA (1854bp) protein (618aa)
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase (EC:3.7.1.-)
Thiamine pyrophosphate protein domain protein TPP-binding protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L3C7_9CLOT
Thiamine pyrophosphate protein domain protein TPP-binding protein {ECO:0000313|EMBL:CCY67507.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
L2_013_000G1_scaffold_42_18
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20072..21085)
DNA (1014bp) protein (338aa)
Inositol 2-dehydrogenase n=1 Tax=Clostridium sp. CAG:678 RepID=R5KLA1_9CLOT
Inositol 2-dehydrogenase {ECO:0000313|EMBL:CCY67508.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Inositol 2-dehydrogenase
L2_013_000G1_scaffold_42_19
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21363..21620
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NH10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF12724.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
hypothetical protein
L2_013_000G1_scaffold_42_20
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21623..23950
DNA (2328bp) protein (776aa)
Putative alpha-N-acetylgalactosaminidase n=1 Tax=Clostridium sp. CAG:217 RepID=R6JP21_9CLOT
Putative alpha-N-acetylgalactosaminidase {ECO:0000313|EMBL:CDB51877.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
sialidase-like protein
L2_013_000G1_scaffold_42_21
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23969..24673
DNA (705bp) protein (235aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
signal peptidase I . Serine peptidase. MEROPS family S26A (EC:3.4.21.89)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IZK2_9CLOT
L2_013_000G1_scaffold_42_22
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(25105..26796)
DNA (1692bp) protein (564aa)
hydrogenases, Fe-only (EC:1.6.5.3)
Hydrogenases, Fe-only {ECO:0000313|EMBL:CBL28839.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CBL28839.1};; TaxID=651822 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Fretibacterium.;" source="Fretibacterium fastidiosum.;"
Hydrogenases, Fe-only n=1 Tax=Fretibacterium fastidiosum RepID=D4MAE4_9BACT
L2_013_000G1_scaffold_42_23
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(26799..28685)
DNA (1887bp) protein (629aa)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit {ECO:0000313|EMBL:CBL28840.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CBL28840.1};; TaxID=651822 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Fretibacterium.;" source="Fretibacterium fastidiosum.;"
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit n=1 Tax=Fretibacterium fastidiosum RepID=D4MAE5_9BACT
L2_013_000G1_scaffold_42_24
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28678..29214)
DNA (537bp) protein (179aa)
NADH:ubiquinone oxidoreductase 24 kD subunit (EC:1.6.5.3)
Respiratory-chain NADH dehydrogenase 24 Kd subunit n=1 Tax=Clostridium sp. L2-50 RepID=A7VEG0_9CLOT
Respiratory-chain NADH dehydrogenase 24 Kd subunit {ECO:0000313|EMBL:EDO58163.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L2_013_000G1_scaffold_42_25
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(29339..29716)
DNA (378bp) protein (126aa)
Membrane transporter of cation n=2 Tax=Firmicutes RepID=R6QXL6_9FIRM
Membrane transporter of cation {ECO:0000313|EMBL:CDC26747.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
small multidrug resistance protein
L2_013_000G1_scaffold_42_26
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29713..30591)
DNA (879bp) protein (293aa)
Choline binding protein E n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q6G5_9FIRM
Choline binding protein E {ECO:0000313|EMBL:CDC32328.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
glucan-binding domain-containing protein
L2_013_000G1_scaffold_42_27
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30606..31451)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IQC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB52513.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
HAD-superfamily hydrolase, subfamily IIB
L2_013_000G1_scaffold_42_28
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31455..32030)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q936_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32330.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
hypothetical protein
L2_013_000G1_scaffold_42_29
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32216..32815)
DNA (600bp) protein (200aa)
Acetyltransferase GNAT family {ECO:0000313|EMBL:EQB25977.1}; EC=2.3.1.- {ECO:0000313|EMBL:EQB25977.1};; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
Acetyltransferase GNAT family n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IN57_9FIRM
N-acetyltransferase GCN5
L2_013_000G1_scaffold_42_30
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32849..33532)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09390.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
30S ribosomal protein S12
Displaying items 1-30 of 168 in total

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